Changed calibration script to show timing & beta cut, and changed the cut limits to be consistent with commissioning runs. Updated calibration constants for the HGC as well.

* Calibration script now uses normalized energy for particle ID and can update calibration constants directly. Both scripts use PROOF-lite by default. Added a run_cal script for ease of use. README now reflects updated scripts.

* Calibration/running script cleanup

* Updating scripts to be compatible with new PRODUCTION replay

* Altered scripts to be compatible with new SI units and changed axis labels.

* Updated NGC & HGC calibration to align with new SI units.

hcana.

in hcana.

hcana.

1) minor modification in HMS DC calib code: 2) Added new hms param files from HMS Cosmic run 859: 3)modified coarse t0 in hms dc cuts file: 4) added tzero param file in hms general.param (#265)

* Calibration script now uses normalized energy for particle ID and can update calibration constants directly. Both scripts use PROOF-lite by default. Added a run_cal script for ease of use. README now reflects updated scripts.

* Calibration/running script cleanup

Calibration script now uses normalized energy for particle ID and can update calibration constants directly. Both scripts use PROOF-lite by default. Added a run_cal script for ease of use. README now reflects updated scripts. (#224)

add re-structured SHMS DC Calibration in terms of classes and methods. This is a version of the SHMS DC Calibration code that seems to work. Along with the parameter files produce by it. (#228)

* added files used for shms dc alignment

* moved some dc alignment files around

* removed script in production

* May 26, 2017 -- Long overdue push, some old Calibration Scripts but also the presently working analysis and Calibration scripts in Final Scripts directory.

* Updated Calibration with pulseAmp script.

* root file

* added Rootfiles

* Rewrote pulseAmp analysis, works much better now.
Included Degtiarenko's code to evaluate as a better alternative.
Started the write up for the actual calibration process

* Updated Analysis scripts, started deciphering Fortran code.

* test

* TEST

* test

* bla

* blah

* boring git stuff

* git stuff

* Made the master branch much more organized/presentable

* Finializing directory. Modified how calibration appears/output the calibration constants

* Updated the analysis and visualization scripts for NGC.

* Version of Calibration suitable for the Summer presentation.

* Removed debugging line

* Updating repository with changes made at software workshop

* Added changes to PARAM & DBASE files to take appropriate HGC calibration constants for each run.

* Changed replay output to something more sensible

* Added new Analysis scripts to master

* Removing bloat from merge with branch Ryan

* Removing redundant files from master

* Added properly named, properly formatted calibration scripts to master

* Removed bloat with the README file

* Removed more bloat in data_files

* Updated calibration file

* Updated calibration script to include the NGC as well. Added calibration parameters to PARAM & DBASE in an identical method as the HGC.

* Updated calibraion scripts

* Removed tracking of .gitignore

* Added .gitignore...can't change branches otherwise

* Updated calibration script to include Eric's recommendation of cuting on TracksFired leaf.

* Updated investigation of the integrals of first few photoelectrons

* Updated display to show expected integral based on Poisson statistics

* Updated Calorimeter PARAM CALIB file after discussion with Varden

* Merged efficiencies from development branch to master

* Updated efficiency script to only display info if requested, and will now output the cuts on beta and timing

* Cleaned up efficiencies.C, now in more or less a final stage.
calibration still needs a little cleaning up, especially concerning the poisson/Guassian after processing which yielded little information.

* Updated calibration, much cleaner and sensible

* Added particle ID for tracksfired calibration strategy

* Changed the calibrated histograms to have identical limits/bins. Required merging some bins together from original data...should be okay.

* Updated files to include cut on delta p on all 3 Cherenkovs

* Cleaned up tracksfired calibration strategy

* Added quick README on instructions to run script

* Finialized the quick README.md

* Update README.md

* Update .gitignore

* Deleted unnecessary DBASE files

* Cleaned up Pull request

* Changed Cal Calib run488 file to remove old calib constants

Set pdumptof = 1

Create two files
htofcalib.param
ptofcalib.param

Each of these files sets the flag to dump the tof calibration
data to a file that is designated in the file.
The user has to add a line
gHcParms->Load("PARAM/HMS/HODO/htofcal.param");

or

gHcParms->Load("PARAM/SHMS/HODO/ptofcal.param");
to the replay script to get the  data files hodo calibration

Remove these parameters from the regular hodo calibration files.

* -Modified shms dc calib scripts in accord with the recent hallc replay restructure
-updated Drift Chamber Calib parameters for run 488 after making the changes to the calibration code

* removed tzero offsets from geom param file

* May 26, 2017 -- Long overdue push, some old Calibration Scripts but also the presently working analysis and Calibration scripts in Final Scripts directory.

* Updated Calibration with pulseAmp script.

* root file

* added Rootfiles

* Rewrote pulseAmp analysis, works much better now.
Included Degtiarenko's code to evaluate as a better alternative.
Started the write up for the actual calibration process

* Updated Analysis scripts, started deciphering Fortran code.

* test

* TEST

* test

* bla

* blah

* boring git stuff

* git stuff

* Made the master branch much more organized/presentable

* Finializing directory. Modified how calibration appears/output the calibration constants

* Updated the analysis and visualization scripts for NGC.

* Version of Calibration suitable for the Summer presentation.

* Removed debugging line

choosing an event range.

* minor fixes to shms dc calib

* Changed the binning scheme in the shms calibrations such that at 0 ns (tzero-corrected) will be centerd about its corresponding bin, and not at an edge.

new script to apply the tzero correction as the plane drift times are filled. For each entry filled, the corresponding wire and plane hit are obtained, and the tzero corresponding to the wire hit is applied.

* commented out a cout line

* increased the total number of bins by two, since the bin width was reduced from 2ns to 1ns. This change produced better drift distances

* reduced drift time bin width to 1ns.

* reduced bin width to 1 ns/bin

* reduced bin width to 1 ns /bin

* Updated parameter files

* added README file

* added README.md file for SHMS DC Calibrations

* Added readme file for shms dc calibration

* Added minor fix to the script to fix compilationerror in root 5.34.36

* minor fix

* get_tzero_per_wire_param.C

* fix to be compatible with root 5.34.36

* fix minor issues

* added stricter restriction on good t0 selection

* added option to read input file and event number to loop over

* added option to read input file and number of entries to analyze

* swapped x:y axes in 2d plots to display drift times vs. wire number, and added labels to the axes

* minor change in output file name

* added option to read filename, and changed the naming scheme of the output .root and .dat files produced

* added option to read input file and number of events, also changed naming of input and output .dat files to be consistent with the other changes made so far.

* added option to read input file and number of entries

* added option to read input file and number of events, and also added axes titles to histos

* added option to read input file and numberof events, also modified name of .root file being read

* added axes titles to histos

* added option to promt user to enter input file, run number, and number events to analyze. Also made a few improvements overall

* -added script that will output a parameter file with individual tzero values (NOT per ribbon cable as before)

* -included the execution of 'get_tzero_per_wire.param' in steering script.

* -added precicion to the t0 calculation. Although the calculation involved the ratios of two 'doubles', the t0 came out to be an integer. This imprecision was corrected.

* -add minor fix

* added minor fix to read in corrected t0 values

* minor fix

* most up-to-date shms DC param files

latest naming conventions in hcana code.

       Change of tree branch names in THcShowerCalib.h and
       THcPShowerCalib.h.

* -added the lines to read run number to the top of the script.

* -Modified SHMS DC DEF FILE to display drift times with binning scheme same as used in calib.
-Added the most up-to-date shms dc parameters obtained from the modified shms dc calib. script

* -set option to use per_wire tzero ON.

* -added a few lines of code to produce a weighted tzero data file
per wire basis, where the weight is by groups (ribbon cables)

* -started to add lines to read per-wire tzero parameter data file. (work in progress)

* -mofidied plane numbering in 'get_zero_param.C' to match the rest of the
calibration script plane numbering scheme

* -minor fix

* -script that reads a data file containing the per wire tzeros
-the tzero correction is applies on a wire-by-wire basis and the
wire drift times are added to produce the corrected plane drift times

* minor modifications to name of file being read

* -minor modifications to file name being read

per wire basis, where the weight is by groups (ribbon cables)

* initialied script for writing individual wire tzero values into a parameter file

* script to add tzero param

* -added statement that explicitly assigns a tzero value of zero if certain criteria are not met, rather than leaving a blank line.

* -Added boolean operator to determine ribbon cable group and looped over
each ribbon cable group corresponding to shms planes DC 1U1 and DC 1U2, so far.
...Work in Progress to calculate weighted average t0 per ribbon cable.

* -script that gets tzero values per ribbon cable and writes out a param file
with the tzero values on a wire basis.

* -made few modifications (still not complete)

* -added dynamic array that holds the group value (5 or 7) for each plane

* SHMS DC Calibration script that takes the weighted average tzero per ribbon cable, and produces a parameter file containing the weighted average tzero per ribbon cable group, expressed on a wire-by-wire basis.

* -added lines to read in run number from a text file

* -added line to execute 'get_tzero_param.C' which creates a parameter
file with updated tzero values.

run_Cal.C          commented out some boolean statements producing
                   that were producing a compilaton error. Commented out
                   execution of script update_pdcparam.C, as it is obsolete,
                   since we will be using a new paramerer file containing
                   individual wire tzero.

get_pdc_time_histo.C  commented out obsolete lines that created some directories

wire_drift_times.C  declared 'wirenum' variable outside of loop to solve the
                    "use of undeclared identifier" compilation error

get_wire_tzero.C    moved several variable declarations outside the loop
		    over sensewires to solve  "use of undeclared identifier"
		    compilation error

get_LookUp_Values.C minor syntax error fix.

hcal.param
   1) gains for run 303,
   2) hcal_AdcNegThreshold=0.
   3) hcal_AdcPosThreshold=0.

pcal.param
   1) gains for run 464
   2)pcal_AdcNegThreshold=0.
   3)pcal_AdcPosThreshold=0.
   4)pcal_arr_AdcThreshold=0.0

Modified DEF-files for new names for the Cherenkov and Aerogel