Changed calibration script to show timing & beta cut, and changed the cut limits to be consistent with commissioning runs. Updated calibration constants for the HGC as well.

Change ADC time window cut which actually
is now cut on the TDC -ADC time.

Add new hhodo_calib.param from cosmic run 1097

Set cosmicflag=0 in anticipation of beam

Vardan introduce new correction in SHMS Preshower
coordinate calculation

Add new map reference times
Add paramters for adc_tdc_offset

Added
pTOFCalib_shtrk_lo=.6
pTOFCalib_shtrk_hi=1.5
pNumPlanesBetaCalc=3

With the change of units to pC had to multiply
that hodo parameters for the sqrt(adc) correction
by a factor of sqrt(.020).

This makes the beta looks as it did before.

Update HMS/SHMS calibration constants to have units of pC instead of channesl to match updated HCANA

deleted obselete SHMS DC Param file, since I did the calibration for Run 484, and the parameters produced relatively flat drift distances independetn of Run 484 or 488 from KPP

add re-structured SHMS DC Calibration in terms of classes and methods. This is a version of the SHMS DC Calibration code that seems to work. Along with the parameter files produce by it. (#228)

* added files used for shms dc alignment

* moved some dc alignment files around

* removed script in production

* updated shms geo param

* updated plots for shms dc monitoring

* added files used for shms dc alignment

* moved some dc alignment files around

* removed script in production

* Add efficiency calculations for the layers of the calorimeters.

* Add efficiency calculation for the Array part of calorimeter.

* Update phgcer_calib.param

@vardant These calibration numbers should be included in hallc_replay/PARAM/SHMS/HGCER/CALIB/KPP_Spring_2017/.  For reference the gain constants for run 464 were phgcer_adc_to_npe = 1/111., 1/118., 1/122., 1/125.

* Update pcal_geom.param

Fix some typos

* May 26, 2017 -- Long overdue push, some old Calibration Scripts but also the presently working analysis and Calibration scripts in Final Scripts directory.

* Updated Calibration with pulseAmp script.

* root file

* added Rootfiles

* Rewrote pulseAmp analysis, works much better now.
Included Degtiarenko's code to evaluate as a better alternative.
Started the write up for the actual calibration process

* Updated Analysis scripts, started deciphering Fortran code.

* test

* TEST

* test

* bla

* blah

* boring git stuff

* git stuff

* Made the master branch much more organized/presentable

* Finializing directory. Modified how calibration appears/output the calibration constants

* Updated the analysis and visualization scripts for NGC.

* Version of Calibration suitable for the Summer presentation.

* Removed debugging line

* Updating repository with changes made at software workshop

* Added changes to PARAM & DBASE files to take appropriate HGC calibration constants for each run.

* Changed replay output to something more sensible

* Added new Analysis scripts to master

* Removing bloat from merge with branch Ryan

* Removing redundant files from master

* Added properly named, properly formatted calibration scripts to master

* Removed bloat with the README file

* Removed more bloat in data_files

* Updated calibration file

* Updated calibration script to include the NGC as well. Added calibration parameters to PARAM & DBASE in an identical method as the HGC.

* Updated calibraion scripts

* Removed tracking of .gitignore

* Added .gitignore...can't change branches otherwise

* Updated calibration script to include Eric's recommendation of cuting on TracksFired leaf.

* Updated investigation of the integrals of first few photoelectrons

* Updated display to show expected integral based on Poisson statistics

* Updated Calorimeter PARAM CALIB file after discussion with Varden

* Merged efficiencies from development branch to master

* Updated efficiency script to only display info if requested, and will now output the cuts on beta and timing

* Cleaned up efficiencies.C, now in more or less a final stage.
calibration still needs a little cleaning up, especially concerning the poisson/Guassian after processing which yielded little information.

* Updated calibration, much cleaner and sensible

* Added particle ID for tracksfired calibration strategy

* Changed the calibrated histograms to have identical limits/bins. Required merging some bins together from original data...should be okay.

* Updated files to include cut on delta p on all 3 Cherenkovs

* Cleaned up tracksfired calibration strategy

* Added quick README on instructions to run script

* Finialized the quick README.md

* Update README.md

* Update .gitignore

* Deleted unnecessary DBASE files

* Cleaned up Pull request

* Changed Cal Calib run488 file to remove old calib constants

Set pdumptof = 1

Create two files
htofcalib.param
ptofcalib.param

Each of these files sets the flag to dump the tof calibration
data to a file that is designated in the file.
The user has to add a line
gHcParms->Load("PARAM/HMS/HODO/htofcal.param");

or

gHcParms->Load("PARAM/SHMS/HODO/ptofcal.param");
to the replay script to get the  data files hodo calibration

Remove these parameters from the regular hodo calibration files.

* -Modified shms dc calib scripts in accord with the recent hallc replay restructure
-updated Drift Chamber Calib parameters for run 488 after making the changes to the calibration code

* removed tzero offsets from geom param file

* Add directory stucture for report outputs

* Add directory structure for templates

* Add directory structure to SCRIPTS directory

* Remove templates from old directory stucture

* Create SHMS EPICS directory

* Configure stack and scaler replay

Add directroy structure to scripts directory

* Add directories for stack and scalers for report output

* Modify locations of replay scripts, def-files, and templates

* Incoporate fast raster into trigger apparatus and stack map

* Add directory structure to maps

Reconfigure test stand scripts to point to new map loactions

* Add fast raster histograms and aesthetic changes

* Tweak stack & all DEF-files

Rename cut files

Configure separate replay scripts

* Remove REPORT_OUTPUT directory from framework since this file should be sym linked to the RAID disk

* Uncomment histos

* Re-work DEF-file directory structure so that one DEF-file exists for each stack component

Include python script to cat individual DEF-files into single DEF-file

* Add new paramter structure of the NGC

* Add new paramter structure of the HGC

* Add new paramter structure of the aerogel

* Add new paramter structure of the calorimeter

* Add new paramter structure of the hodoscope

* Add new paramter structure of the drift chambers

* remove deprecated paramter files

* Remove deprecated parameter files

* Add calibration steering files for run specific calibrations

Remove deprecated general parameter files

* Include calibration steering files

* Include calibiration files for all replay scripts

* Include CALIB directory in path

* Add various run specific gain calibration constants for the SHMS HGC & NGC

* Add KPP specific Chrenkov parameter files

* Default to KPP run 488 for now

* Include directory structure for databases

Add specific KPP runs to general database

* Remove deprecated database files

* Modify shms stack analyzer script to handle new DB structure

* Include new DB structure to various replay scripts

* Include calibration constants for the SHMS calorimeter

Add low momentum run to kinematics file

* Add calibration constants for good kpp calo runs

* May 26, 2017 -- Long overdue push, some old Calibration Scripts but also the presently working analysis and Calibration scripts in Final Scripts directory.

* Updated Calibration with pulseAmp script.

* root file

* added Rootfiles

* Rewrote pulseAmp analysis, works much better now.
Included Degtiarenko's code to evaluate as a better alternative.
Started the write up for the actual calibration process

* Updated Analysis scripts, started deciphering Fortran code.

* test

* TEST

* test

* bla

* blah

* boring git stuff

* git stuff

* Made the master branch much more organized/presentable

* Finializing directory. Modified how calibration appears/output the calibration constants

* Updated the analysis and visualization scripts for NGC.

* Version of Calibration suitable for the Summer presentation.

* Removed debugging line

* commented out a cout line

* increased the total number of bins by two, since the bin width was reduced from 2ns to 1ns. This change produced better drift distances

* reduced drift time bin width to 1ns.

* reduced bin width to 1 ns/bin

* reduced bin width to 1 ns /bin

* Updated parameter files

COSY was run with Q2 set to 0.985*( ideal setting)
which better matches the focal plane distributions.
New optics reconstruction matrix.

* -added script that will output a parameter file with individual tzero values (NOT per ribbon cable as before)

* -included the execution of 'get_tzero_per_wire.param' in steering script.

* -added precicion to the t0 calculation. Although the calculation involved the ratios of two 'doubles', the t0 came out to be an integer. This imprecision was corrected.

* -add minor fix

* added minor fix to read in corrected t0 values

* minor fix

* most up-to-date shms DC param files