Pooser template work recover (#173)

* Add directory stucture for report outputs

* Add directory structure for templates

* Add directory structure to SCRIPTS directory

* Remove templates from old directory stucture

* Create SHMS EPICS directory

* Configure stack and scaler replay

Add directroy structure to scripts directory

* Add directories for stack and scalers for report output

* Modify locations of replay scripts, def-files, and templates

* Incoporate fast raster into trigger apparatus and stack map

* Add directory structure to maps

Reconfigure test stand scripts to point to new map loactions

* Add fast raster histograms and aesthetic changes

* Tweak stack & all DEF-files

Rename cut files

Configure separate replay scripts

* Remove REPORT_OUTPUT directory from framework since this file should be sym linked to the RAID disk

* Uncomment histos

* Re-work DEF-file directory structure so that one DEF-file exists for each stack component

Include python script to cat individual DEF-files into single DEF-file

* Add new paramter structure of the NGC

* Add new paramter structure of the HGC

* Add new paramter structure of the aerogel

* Add new paramter structure of the calorimeter

* Add new paramter structure of the hodoscope

* Add new paramter structure of the drift chambers

* remove deprecated paramter files

* Remove deprecated parameter files

* Add calibration steering files for run specific calibrations

Remove deprecated general parameter files

* Include calibration steering files

* Include calibiration files for all replay scripts

* Include CALIB directory in path

DBASE/GEN/KPP_Spring_2017/calib_464.param

+; SHMS calibration files for run 464
+#include "PARAM/SHMS/CAL/CALIB/KPP_Spring_2017/pcal_calib_464.param"
\ No newline at end of file

DBASE/GEN/KPP_Spring_2017/calib_469.param

+; SHMS calibration files for run 469
+#include "PARAM/SHMS/DC/CALIB/KPP_Spring_2017/pdc_calib_469.param"

DBASE/GEN/KPP_Spring_2017/calib_475.param

+; SHMS calibration files for run 475
+#include "PARAM/SHMS/CAL/CALIB/KPP_Spring_2017/pcal_calib_475.param"

DBASE/GEN/KPP_Spring_2017/calib_478.param

+; SHMS calibration files for run 478
+#include "PARAM/SHMS/CAL/CALIB/KPP_Spring_2017/pcal_calib_478.param"

DBASE/GEN/KPP_Spring_2017/calib_479.param

+; SHMS calibration files for run 479
+#include "PARAM/SHMS/CAL/CALIB/KPP_Spring_2017/pcal_calib_479.param"

DBASE/GEN/KPP_Spring_2017/calib_480.param

+; SHMS calibration files for run 480
+#include "PARAM/SHMS/CAL/CALIB/KPP_Spring_2017/pcal_calib_480.param"
\ No newline at end of file

DBASE/GEN/KPP_Spring_2017/calib_481.param

+; SHMS calibration files for run 481
+#include "PARAM/SHMS/CAL/CALIB/KPP_Spring_2017/pcal_calib_481.param"

DBASE/GEN/KPP_Spring_2017/calib_483.param

+; SHMS calibration files for run 483
+#include "PARAM/SHMS/NGCER/CALIB/KPP_Spring_2017/pngcer_calib_483.param"
+#include "PARAM/SHMS/HGCER/CALIB/KPP_Spring_2017/phgcer_calib_483.param"

DBASE/GEN/KPP_Spring_2017/calib_484.param

+; SHMS calibration files for run 484
+#include "PARAM/SHMS/DC/CALIB/KPP_Spring_2017/pdc_calib_484.param"
+#include "PARAM/SHMS/HGCER/CALIB/KPP_Spring_2017/phgcer_calib_484.param"

DBASE/GEN/KPP_Spring_2017/calib_486.param

+; SHMS calibration files for run 486
+#include "PARAM/SHMS/HGCER/CALIB/KPP_Spring_2017/phgcer_calib_486.param"

DBASE/GEN/KPP_Spring_2017/calib_487.param

+; SHMS calibration files for run 487
+#include "PARAM/SHMS/NGCER/CALIB/KPP_Spring_2017/pngcer_calib_487.param"
+#include "PARAM/SHMS/HGCER/CALIB/KPP_Spring_2017/phgcer_calib_487.param"

DBASE/GEN/KPP_Spring_2017/calib_488.param

+; SHMS calibration files for run 488
+#include "PARAM/SHMS/NGCER/CALIB/KPP_Spring_2017/pngcer_calib_488.param"
+#include "PARAM/SHMS/DC/CALIB/KPP_Spring_2017/pdc_calib_488.param"
+#include "PARAM/SHMS/HGCER/CALIB/KPP_Spring_2017/phgcer_calib_488.param"
+#include "PARAM/SHMS/CAL/CALIB/KPP_Spring_2017/pcal_calib_488.param"

DBASE/GEN/KPP_Spring_2017/general_464.param

-#real raddeg
-raddeg=3.14159265/180
-#real cminch
-cminch=2.54
-
-; General Hall-C parameter files
-#include "PARAM/GEN/genflags.param"
-#include "PARAM/GEN/gdebug.param"
-#include "PARAM/GEN/gtarget.param"
-#include "PARAM/GEN/gbeam.param"
-
-; General HMS parameter files
-; Note: hmsflags.param includes spectrometer offsets and options.
-#include "PARAM/HMS/GEN/hcana.param"
-#include "PARAM/HMS/GEN/hdebug.param"
-#include "PARAM/HMS/GEN/hmsflags.param"
-#include "PARAM/HMS/GEN/htracking.param"
-
-; HMS detector specific paramter files
-#include "PARAM/HMS/AERO/haero.param"
-#include "PARAM/HMS/CAL/hcal.pos"
-#include "PARAM/HMS/CAL/hcal.param"
-#include "PARAM/HMS/CER/hcer.param"
-#include "PARAM/HMS/DC/hdc.param"
-#include "PARAM/HMS/DC/hdc.pos"
-#include "PARAM/HMS/DC/hdc_tracking.param"
-#include "PARAM/HMS/DC/hdriftmap.param"
-#include "PARAM/HMS/HODO/hhodo.pos"
-#include "PARAM/HMS/HODO/hhodo.param"
-
-; General SHMS parameter files
-; Note: shmsflags.param includes spectrometer offsets and options.
-#include "PARAM/SHMS/GEN/pcana.param"
-#include "PARAM/SHMS/GEN/pdebug.param"
-#include "PARAM/SHMS/GEN/shmsflags.param"
-#include "PARAM/SHMS/GEN/ptracking.param"
-
-; SHMS detector specific paramter files
-#include "PARAM/SHMS/AERO/paero.param"
-#include "PARAM/SHMS/CAL/KPP_Spring_2017/pcal_464.param"
-#include "PARAM/SHMS/HGCER/phgcer.param"
-#include "PARAM/SHMS/NGCER/pngcer.param"
-#include "PARAM/SHMS/DC/pdc.param"
-#include "PARAM/SHMS/DC/pdc.pos"
-#include "PARAM/SHMS/DC/pdc_tzero_per_wire.param"
-#include "PARAM/SHMS/DC/pdc_tracking.param"
-#include "PARAM/SHMS/DC/pdriftmap.param"
-#include "PARAM/SHMS/HODO/phodo.pos"
-#include "PARAM/SHMS/HODO/phodo.param"

DBASE/GEN/KPP_Spring_2017/general_475.param

-#real raddeg
-raddeg=3.14159265/180
-#real cminch
-cminch=2.54
-
-; General Hall-C parameter files
-#include "PARAM/GEN/genflags.param"
-#include "PARAM/GEN/gdebug.param"
-#include "PARAM/GEN/gtarget.param"
-#include "PARAM/GEN/gbeam.param"
-
-; General HMS parameter files
-; Note: hmsflags.param includes spectrometer offsets and options.
-#include "PARAM/HMS/GEN/hcana.param"
-#include "PARAM/HMS/GEN/hdebug.param"
-#include "PARAM/HMS/GEN/hmsflags.param"
-#include "PARAM/HMS/GEN/htracking.param"
-
-; HMS detector specific paramter files
-#include "PARAM/HMS/AERO/haero.param"
-#include "PARAM/HMS/CAL/hcal.pos"
-#include "PARAM/HMS/CAL/hcal.param"
-#include "PARAM/HMS/CER/hcer.param"
-#include "PARAM/HMS/DC/hdc.param"
-#include "PARAM/HMS/DC/hdc.pos"
-#include "PARAM/HMS/DC/hdc_tracking.param"
-#include "PARAM/HMS/DC/hdriftmap.param"
-#include "PARAM/HMS/HODO/hhodo.pos"
-#include "PARAM/HMS/HODO/hhodo.param"
-
-; General SHMS parameter files
-; Note: shmsflags.param includes spectrometer offsets and options.
-#include "PARAM/SHMS/GEN/pcana.param"
-#include "PARAM/SHMS/GEN/pdebug.param"
-#include "PARAM/SHMS/GEN/shmsflags.param"
-#include "PARAM/SHMS/GEN/ptracking.param"
-
-; SHMS detector specific paramter files
-#include "PARAM/SHMS/AERO/paero.param"
-#include "PARAM/SHMS/CAL/KPP_Spring_2017/pcal_475.param"
-#include "PARAM/SHMS/HGCER/phgcer.param"
-#include "PARAM/SHMS/NGCER/pngcer.param"
-#include "PARAM/SHMS/DC/pdc.param"
-#include "PARAM/SHMS/DC/pdc.pos"
-#include "PARAM/SHMS/DC/pdc_tzero_per_wire.param"
-#include "PARAM/SHMS/DC/pdc_tracking.param"
-#include "PARAM/SHMS/DC/pdriftmap.param"
-#include "PARAM/SHMS/HODO/phodo.pos"
-#include "PARAM/SHMS/HODO/phodo.param"

DBASE/GEN/KPP_Spring_2017/general_478.param

-#real raddeg
-raddeg=3.14159265/180
-#real cminch
-cminch=2.54
-
-; General Hall-C parameter files
-#include "PARAM/GEN/genflags.param"
-#include "PARAM/GEN/gdebug.param"
-#include "PARAM/GEN/gtarget.param"
-#include "PARAM/GEN/gbeam.param"
-
-; General HMS parameter files
-; Note: hmsflags.param includes spectrometer offsets and options.
-#include "PARAM/HMS/GEN/hcana.param"
-#include "PARAM/HMS/GEN/hdebug.param"
-#include "PARAM/HMS/GEN/hmsflags.param"
-#include "PARAM/HMS/GEN/htracking.param"
-
-; HMS detector specific paramter files
-#include "PARAM/HMS/AERO/haero.param"
-#include "PARAM/HMS/CAL/hcal.pos"
-#include "PARAM/HMS/CAL/hcal.param"
-#include "PARAM/HMS/CER/hcer.param"
-#include "PARAM/HMS/DC/hdc.param"
-#include "PARAM/HMS/DC/hdc.pos"
-#include "PARAM/HMS/DC/hdc_tracking.param"
-#include "PARAM/HMS/DC/hdriftmap.param"
-#include "PARAM/HMS/HODO/hhodo.pos"
-#include "PARAM/HMS/HODO/hhodo.param"
-
-; General SHMS parameter files
-; Note: shmsflags.param includes spectrometer offsets and options.
-#include "PARAM/SHMS/GEN/pcana.param"
-#include "PARAM/SHMS/GEN/pdebug.param"
-#include "PARAM/SHMS/GEN/shmsflags.param"
-#include "PARAM/SHMS/GEN/ptracking.param"
-
-; SHMS detector specific paramter files
-#include "PARAM/SHMS/AERO/paero.param"
-#include "PARAM/SHMS/CAL/KPP_Spring_2017/pcal_478.param"
-#include "PARAM/SHMS/HGCER/phgcer.param"
-#include "PARAM/SHMS/NGCER/pngcer.param"
-#include "PARAM/SHMS/DC/pdc.param"
-#include "PARAM/SHMS/DC/pdc.pos"
-#include "PARAM/SHMS/DC/pdc_tzero_per_wire.param"
-#include "PARAM/SHMS/DC/pdc_tracking.param"
-#include "PARAM/SHMS/DC/pdriftmap.param"
-#include "PARAM/SHMS/HODO/phodo.pos"
-#include "PARAM/SHMS/HODO/phodo.param"

DBASE/GEN/KPP_Spring_2017/general_479.param

-#real raddeg
-raddeg=3.14159265/180
-#real cminch
-cminch=2.54
-
-; General Hall-C parameter files
-#include "PARAM/GEN/genflags.param"
-#include "PARAM/GEN/gdebug.param"
-#include "PARAM/GEN/gtarget.param"
-#include "PARAM/GEN/gbeam.param"
-
-; General HMS parameter files
-; Note: hmsflags.param includes spectrometer offsets and options.
-#include "PARAM/HMS/GEN/hcana.param"
-#include "PARAM/HMS/GEN/hdebug.param"
-#include "PARAM/HMS/GEN/hmsflags.param"
-#include "PARAM/HMS/GEN/htracking.param"
-
-; HMS detector specific paramter files
-#include "PARAM/HMS/AERO/haero.param"
-#include "PARAM/HMS/CAL/hcal.pos"
-#include "PARAM/HMS/CAL/hcal.param"
-#include "PARAM/HMS/CER/hcer.param"
-#include "PARAM/HMS/DC/hdc.param"
-#include "PARAM/HMS/DC/hdc.pos"
-#include "PARAM/HMS/DC/hdc_tracking.param"
-#include "PARAM/HMS/DC/hdriftmap.param"
-#include "PARAM/HMS/HODO/hhodo.pos"
-#include "PARAM/HMS/HODO/hhodo.param"
-
-; General SHMS parameter files
-; Note: shmsflags.param includes spectrometer offsets and options.
-#include "PARAM/SHMS/GEN/pcana.param"
-#include "PARAM/SHMS/GEN/pdebug.param"
-#include "PARAM/SHMS/GEN/shmsflags.param"
-#include "PARAM/SHMS/GEN/ptracking.param"
-
-; SHMS detector specific paramter files
-#include "PARAM/SHMS/AERO/paero.param"
-#include "PARAM/SHMS/CAL/KPP_Spring_2017/pcal_479.param"
-#include "PARAM/SHMS/HGCER/phgcer.param"
-#include "PARAM/SHMS/NGCER/pngcer.param"
-#include "PARAM/SHMS/DC/pdc.param"
-#include "PARAM/SHMS/DC/pdc.pos"
-#include "PARAM/SHMS/DC/pdc_tzero_per_wire.param"
-#include "PARAM/SHMS/DC/pdc_tracking.param"
-#include "PARAM/SHMS/DC/pdriftmap.param"
-#include "PARAM/SHMS/HODO/phodo.pos"
-#include "PARAM/SHMS/HODO/phodo.param"

DBASE/GEN/KPP_Spring_2017/general_480.param

-#real raddeg
-raddeg=3.14159265/180
-#real cminch
-cminch=2.54
-
-; General Hall-C parameter files
-#include "PARAM/GEN/genflags.param"
-#include "PARAM/GEN/gdebug.param"
-#include "PARAM/GEN/gtarget.param"
-#include "PARAM/GEN/gbeam.param"
-
-; General HMS parameter files
-; Note: hmsflags.param includes spectrometer offsets and options.
-#include "PARAM/HMS/GEN/hcana.param"
-#include "PARAM/HMS/GEN/hdebug.param"
-#include "PARAM/HMS/GEN/hmsflags.param"
-#include "PARAM/HMS/GEN/htracking.param"
-
-; HMS detector specific paramter files
-#include "PARAM/HMS/AERO/haero.param"
-#include "PARAM/HMS/CAL/hcal.pos"
-#include "PARAM/HMS/CAL/hcal.param"
-#include "PARAM/HMS/CER/hcer.param"
-#include "PARAM/HMS/DC/hdc.param"
-#include "PARAM/HMS/DC/hdc.pos"
-#include "PARAM/HMS/DC/hdc_tracking.param"
-#include "PARAM/HMS/DC/hdriftmap.param"
-#include "PARAM/HMS/HODO/hhodo.pos"
-#include "PARAM/HMS/HODO/hhodo.param"
-
-; General SHMS parameter files
-; Note: shmsflags.param includes spectrometer offsets and options.
-#include "PARAM/SHMS/GEN/pcana.param"
-#include "PARAM/SHMS/GEN/pdebug.param"
-#include "PARAM/SHMS/GEN/shmsflags.param"
-#include "PARAM/SHMS/GEN/ptracking.param"
-
-; SHMS detector specific paramter files
-#include "PARAM/SHMS/AERO/paero.param"
-#include "PARAM/SHMS/CAL/KPP_Spring_2017/pcal_480.param"
-#include "PARAM/SHMS/HGCER/phgcer.param"
-#include "PARAM/SHMS/NGCER/pngcer.param"
-#include "PARAM/SHMS/DC/pdc.param"
-#include "PARAM/SHMS/DC/pdc.pos"
-#include "PARAM/SHMS/DC/pdc_tzero_per_wire.param"
-#include "PARAM/SHMS/DC/pdc_tracking.param"
-#include "PARAM/SHMS/DC/pdriftmap.param"
-#include "PARAM/SHMS/HODO/phodo.pos"
-#include "PARAM/SHMS/HODO/phodo.param"

DBASE/GEN/KPP_Spring_2017/general_481.param

-#real raddeg
-raddeg=3.14159265/180
-#real cminch
-cminch=2.54
-
-; General Hall-C parameter files
-#include "PARAM/GEN/genflags.param"
-#include "PARAM/GEN/gdebug.param"
-#include "PARAM/GEN/gtarget.param"
-#include "PARAM/GEN/gbeam.param"
-
-; General HMS parameter files
-; Note: hmsflags.param includes spectrometer offsets and options.
-#include "PARAM/HMS/GEN/hcana.param"
-#include "PARAM/HMS/GEN/hdebug.param"
-#include "PARAM/HMS/GEN/hmsflags.param"
-#include "PARAM/HMS/GEN/htracking.param"
-
-; HMS detector specific paramter files
-#include "PARAM/HMS/AERO/haero.param"
-#include "PARAM/HMS/CAL/hcal.pos"
-#include "PARAM/HMS/CAL/hcal.param"
-#include "PARAM/HMS/CER/hcer.param"
-#include "PARAM/HMS/DC/hdc.param"
-#include "PARAM/HMS/DC/hdc.pos"
-#include "PARAM/HMS/DC/hdc_tracking.param"
-#include "PARAM/HMS/DC/hdriftmap.param"
-#include "PARAM/HMS/HODO/hhodo.pos"
-#include "PARAM/HMS/HODO/hhodo.param"
-
-; General SHMS parameter files
-; Note: shmsflags.param includes spectrometer offsets and options.
-#include "PARAM/SHMS/GEN/pcana.param"
-#include "PARAM/SHMS/GEN/pdebug.param"
-#include "PARAM/SHMS/GEN/shmsflags.param"
-#include "PARAM/SHMS/GEN/ptracking.param"
-
-; SHMS detector specific paramter files
-#include "PARAM/SHMS/AERO/paero.param"
-#include "PARAM/SHMS/CAL/KPP_Spring_2017/pcal_481.param"
-#include "PARAM/SHMS/HGCER/phgcer.param"
-#include "PARAM/SHMS/NGCER/pngcer.param"
-#include "PARAM/SHMS/DC/pdc.param"
-#include "PARAM/SHMS/DC/pdc.pos"
-#include "PARAM/SHMS/DC/pdc_tzero_per_wire.param"
-#include "PARAM/SHMS/DC/pdc_tracking.param"
-#include "PARAM/SHMS/DC/pdriftmap.param"
-#include "PARAM/SHMS/HODO/phodo.pos"
-#include "PARAM/SHMS/HODO/phodo.param"

DBASE/GEN/KPP_Spring_2017/general_483.param

-#real raddeg
-raddeg=3.14159265/180
-#real cminch
-cminch=2.54
-
-; General Hall-C parameter files
-#include "PARAM/GEN/genflags.param"
-#include "PARAM/GEN/gdebug.param"
-#include "PARAM/GEN/gtarget.param"
-#include "PARAM/GEN/gbeam.param"
-
-; General HMS parameter files
-; Note: hmsflags.param includes spectrometer offsets and options.
-#include "PARAM/HMS/GEN/hcana.param"
-#include "PARAM/HMS/GEN/hdebug.param"
-#include "PARAM/HMS/GEN/hmsflags.param"
-#include "PARAM/HMS/GEN/htracking.param"
-
-; HMS detector specific paramter files
-#include "PARAM/HMS/AERO/haero.param"
-#include "PARAM/HMS/CAL/hcal.pos"
-#include "PARAM/HMS/CAL/hcal.param"
-#include "PARAM/HMS/CER/hcer.param"
-#include "PARAM/HMS/DC/hdc.param"
-#include "PARAM/HMS/DC/hdc.pos"
-#include "PARAM/HMS/DC/hdc_tracking.param"
-#include "PARAM/HMS/DC/hdriftmap.param"
-#include "PARAM/HMS/HODO/hhodo.pos"
-#include "PARAM/HMS/HODO/hhodo.param"
-
-; General SHMS parameter files
-; Note: shmsflags.param includes spectrometer offsets and options.
-#include "PARAM/SHMS/GEN/pcana.param"
-#include "PARAM/SHMS/GEN/pdebug.param"
-#include "PARAM/SHMS/GEN/shmsflags.param"
-#include "PARAM/SHMS/GEN/ptracking.param"
-
-; SHMS detector specific paramter files
-#include "PARAM/SHMS/AERO/paero.param"
-#include "PARAM/SHMS/CAL/pcal.param"
-#include "PARAM/SHMS/HGCER/KPP_Spring_2017/phgcer_483.param"
-#include "PARAM/SHMS/NGCER/KPP_Spring_2017/pngcer_483.param"
-#include "PARAM/SHMS/DC/pdc.param"
-#include "PARAM/SHMS/DC/pdc.pos"
-#include "PARAM/SHMS/DC/pdc_tzero_per_wire.param"
-#include "PARAM/SHMS/DC/pdc_tracking.param"
-#include "PARAM/SHMS/DC/pdriftmap.param"
-#include "PARAM/SHMS/HODO/phodo.pos"
-#include "PARAM/SHMS/HODO/phodo.param"

DBASE/GEN/KPP_Spring_2017/general_484.param

-#real raddeg
-raddeg=3.14159265/180
-#real cminch
-cminch=2.54
-
-; General Hall-C parameter files
-#include "PARAM/GEN/genflags.param"
-#include "PARAM/GEN/gdebug.param"
-#include "PARAM/GEN/gtarget.param"
-#include "PARAM/GEN/gbeam.param"
-
-; General HMS parameter files
-; Note: hmsflags.param includes spectrometer offsets and options.
-#include "PARAM/HMS/GEN/hcana.param"
-#include "PARAM/HMS/GEN/hdebug.param"
-#include "PARAM/HMS/GEN/hmsflags.param"
-#include "PARAM/HMS/GEN/htracking.param"
-
-; HMS detector specific paramter files
-#include "PARAM/HMS/AERO/haero.param"
-#include "PARAM/HMS/CAL/hcal.pos"
-#include "PARAM/HMS/CAL/hcal.param"
-#include "PARAM/HMS/CER/hcer.param"
-#include "PARAM/HMS/DC/hdc.param"
-#include "PARAM/HMS/DC/hdc.pos"
-#include "PARAM/HMS/DC/hdc_tracking.param"
-#include "PARAM/HMS/DC/hdriftmap.param"
-#include "PARAM/HMS/HODO/hhodo.pos"
-#include "PARAM/HMS/HODO/hhodo.param"
-
-; General SHMS parameter files
-; Note: shmsflags.param includes spectrometer offsets and options.
-#include "PARAM/SHMS/GEN/pcana.param"
-#include "PARAM/SHMS/GEN/pdebug.param"
-#include "PARAM/SHMS/GEN/shmsflags.param"
-#include "PARAM/SHMS/GEN/ptracking.param"
-
-; SHMS detector specific paramter files
-#include "PARAM/SHMS/AERO/paero.param"
-#include "PARAM/SHMS/CAL/pcal.param"
-#include "PARAM/SHMS/HGCER/KPP_Spring_2017/phgcer_484.param"
-#include "PARAM/SHMS/NGCER/pngcer.param"
-#include "PARAM/SHMS/DC/pdc.param"
-#include "PARAM/SHMS/DC/pdc.pos"
-#include "PARAM/SHMS/DC/pdc_tzero_per_wire.param"
-#include "PARAM/SHMS/DC/pdc_tracking.param"
-#include "PARAM/SHMS/DC/pdriftmap.param"
-#include "PARAM/SHMS/HODO/phodo.pos"
-#include "PARAM/SHMS/HODO/phodo.param"