* Minor changes to SHMS maps

* Minor changes to HMS maps

* Update merge list

* Update crate 3 map for coin

* Update coin maps

* Initial attempt at coincidence replay

* Update coin maps and replay script

1) minor modification in HMS DC calib code: 2) Added new hms param files from HMS Cosmic run 859: 3)modified coarse t0 in hms dc cuts file: 4) added tzero param file in hms general.param (#265)

With the new HMS chambers, need to have separate HMS KPP
  replay script.

Also add gscalers.param to the HMS/GEN/general.param

* fixed stash print

* as designed hms dc param

* new hms dc param to be used

removed SHMS DC Parameters being loaded for specific runs, since now we have a common SHMS DC parameter file for all KPP runs

gscalers.param will have the parameters for converting the BCM scalers into charge and current.

* First hack at setting up coincidence replay

* Add coincidence trigger map

* Update merge list for example purposes

* Add coincidence map

* Create coincidence replay script

* Create separate DBASE directory for SHMS

* Create separate DBASE for SHMS

Fix plethora of issues in HMS replay scripts

* Do not delete onlineDict.h

* -Modified shms dc calib scripts in accord with the recent hallc replay restructure
-updated Drift Chamber Calib parameters for run 488 after making the changes to the calibration code

* removed tzero offsets from geom param file

* Re-structure the PARAM files for HMS and added raster variables to thms.param

* restructure hallc_replay DBASE for HMS param files; add hodo/cer kpp_spring_2017 calibration directories and parameter files

* restructure HMS detector maps directory; add hms run 303 to standard.database

* -added Raster to HMS trigger map
-minor fix in commented raster names
-minor fix in name for HMS to SHMS in an shms map file

* -Include only one spectrometer in 'g.evtyp' variable for HMS/SHMS report file cuts (for the moment ...)

* -added new 'PRODUCTION' directory for HMS where all def files with 'good' variables are included
-copied python script/list from SHMS 'PRODUCTION' directory to HMS.
(This script combines individual detector def files into one)

* -added STACK directory in HMS Def-files dir, which includes only stack histograms (excludes EPICS variables)

* -added TEST_STANDS directory in HMS Def-Files to include raw and good
detector histograms

* -excluded hms Aerogel from def files (for now . . .)

* -updated HMS templates for scalers, stack and production

* Re-structure the PARAM files for HMS and added raster variables to thms.param

* restructure hallc_replay DBASE for HMS param files; add hodo/cer kpp_spring_2017 calibration directories and parameter files

* restructure HMS detector maps directory; add hms run 303 to standard.database

* -added Raster to HMS trigger map
-minor fix in commented raster names
-minor fix in name for HMS to SHMS in an shms map file

* -Include only one spectrometer in 'g.evtyp' variable for HMS/SHMS report file cuts (for the moment ...)

* -added new 'PRODUCTION' directory for HMS where all def files with 'good' variables are included
-copied python script/list from SHMS 'PRODUCTION' directory to HMS.
(This script combines individual detector def files into one)

* -added STACK directory in HMS Def-files dir, which includes only stack histograms (excludes EPICS variables)

* -added TEST_STANDS directory in HMS Def-Files to include raw and good
detector histograms

* -excluded hms Aerogel from def files (for now . . .)

* -updated HMS templates for scalers, stack and production

* -Restructurization of replay scripts in HMS

* Minor fixes in shms replay scripts

* -moved replay scripts to new directories

* Modify naming scheme and aesthetic chaqnges to map

* Move scaler map file and modify naming scheme

* Remove deprecated data base files and relocate them

* Remove depreacted scaler map files in MAPS directory

* Add symbolic links to scaler database files

* Modify scaler prefixes

* Modify templates to utilize new naming convention

* Add directory stucture for report outputs

* Add directory structure for templates

* Add directory structure to SCRIPTS directory

* Remove templates from old directory stucture

* Create SHMS EPICS directory

* Configure stack and scaler replay

Add directroy structure to scripts directory

* Add directories for stack and scalers for report output

* Modify locations of replay scripts, def-files, and templates

* Incoporate fast raster into trigger apparatus and stack map

* Add directory structure to maps

Reconfigure test stand scripts to point to new map loactions

* Add fast raster histograms and aesthetic changes

* Tweak stack & all DEF-files

Rename cut files

Configure separate replay scripts

* Remove REPORT_OUTPUT directory from framework since this file should be sym linked to the RAID disk

* Uncomment histos

* Re-work DEF-file directory structure so that one DEF-file exists for each stack component

Include python script to cat individual DEF-files into single DEF-file

* Add new paramter structure of the NGC

* Add new paramter structure of the HGC

* Add new paramter structure of the aerogel

* Add new paramter structure of the calorimeter

* Add new paramter structure of the hodoscope

* Add new paramter structure of the drift chambers

* remove deprecated paramter files

* Remove deprecated parameter files

* Add calibration steering files for run specific calibrations

Remove deprecated general parameter files

* Include calibration steering files

* Include calibiration files for all replay scripts

* Include CALIB directory in path

* Add various run specific gain calibration constants for the SHMS HGC & NGC

* Add KPP specific Chrenkov parameter files

* Default to KPP run 488 for now

* Include directory structure for databases

Add specific KPP runs to general database

* Remove deprecated database files

* Modify shms stack analyzer script to handle new DB structure

* Include new DB structure to various replay scripts

* Include calibration constants for the SHMS calorimeter

Add low momentum run to kinematics file

* Add calibration constants for good kpp calo runs

Added files
------------
DBASE/db_HSScalerevt.dat : scaler database for HMS
DBASE/db_PSScalerevt.dat : scaler database for SHMS
DBASE/make_scaler_db.py  : Python script to make HMS and SHMS
                           database files from xscaler scaler.map
SCRIPTS/HMS/replay_hms_scalers.C : script to replay HMS scalers only
SCRIPTS/SHMS/replay_shms_scalers.C : script to replay SHMS scalers only
DEF-files/HMS/EPICS/epics_short.def : List of EPICS variables to include in Tree
                                      used in scaler scripts as an example
onlineGUI/Config/hms_scaler.cfg  : configuration file to plot HMS scalers
onlineGUI/Macros/plot_hms_scaler.C  : Macro used by hms_scaler.cfg

onlineGUI/Config/shms_scaler.cfg  : configuration file to plot SHMS scalers
onlineGUI/Macros/plot_shms_scaler.C  : Macro used by shms_scaler.cfg

Modified DBASE/general.param
 #include "PARAM/SHMS/DC/pdc_tzero_per_wire.param"

Modified PARAM/SHMS/DC/pdc.param
  added parameter p_using_tzero_per_wire
  Set to 1 for tzero per wire

Add file PARAM/SHMS/DC/pdc_tzero_per_wire.param
  1) Has parameters for tzero offsets per wire
  2) The offsets were determined per connector
     and all wires in a connector have the same offset

Add file PARAM/SHMS/DC/pdriftmap_tzero_per_wire.param
   1) Drift map to use with p_using_tzero_per_wire=1
   2) Copy to pdriftmap.param

Add file PARAM/SHMS/DC/pdriftmap_plane.param
   1) Drift map to use with p_using_tzero_per_wire=0
   2) Copy to pdriftmap.param

Eliminate g_decode_map_filename in standard.database
since not used by any scripts.
Eliminate loading hgoldtrack.param
Modify hdc_tdc_min_win and hdc_tdc_max_win to reasonable values

Removed old commented entries.
Moved parameters to match SHMS DC files.
Added data from survey C1768.

Reordered SHMS DC parameter files.

Updated README and general.param to match changes.

Modified standard.kinmatics to set ptheta_lab and ppcentral
Modified pcal.param to eliminate stuff left over from when used in standalone
Modified shmsflags.param to eliminate ppcentral and ptheta_lab which should be set in standard.kinematics
Modified phodo.param to have better time offsets and set cosmicflag.

- Fixed some parameters.
- Reformated files.
- Moved some parameters from `pcana.param`.
- Reformated `README.md` in order for pandoc to correctly do nested lists.

* Add reference channels to hdc map.  Change detector id to 22

* Add hodoscope TDC channels.

* Add shms trigger map

* Add shms trigger parameter file

* Minor changes to replay scripts

* Minor changes to hodoscope map and def files. THis work is not complete

* Add hodoscope/trigger combined map

* Correct TDC's in hodoscope map

* Add hodoscope + trigger map.  Corrections to trigger map.

* Minor changes to hodoscope replay script

* Run hdc map through merge_maps python script for aesthetic purposes

* Add reference times to shms hodoscope map

* Add reference time for hodoscope in hodo/trig map

* Add reference times for HMS hodoscope in maps.

* Add reference times to mutli-detector maps

* Add histoagrams for pedestal and tdc's in hodo def file.

* Tweaks to pdc def file

* Minor tweaks to phodo and pdc replay scripts

* Add test stand param to turn off hodoscope reliance on tracking and rid of extraneous files.

* Incorporate SHMS pre-shower and shower in the hallc replay framework

* Add SHMS trigger replay framework

* Add SHMS trigger replay framework...all of it this time

* Add histos to hcal and hhodo def files

Split up the parameter files of the SHMS DCs to match what was done with the HMS DCs.

Modified a few things and cleaned up shop.

I still need to add reference times to both HMS and SHMS chamber wiremaps.