Co-authored-by: Dmitry Kalinkin <dkalinkin@bnl.gov>
Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>

* Update Snakefile

* Update Snakefile

* Update Snakefile

* Update Snakefile

* Update Snakefile

* updated Snakefile

* added fit to the energy recon resolution for neutrons

* added fit for theta res

* refactoring of the correction factors; also removed constant term from the energy res fit

* updated Snakefile

* added fit to the energy recon resolution for neutrons

* added fit for theta res

Same as https://github.com/eic/detector_benchmarks/pull/51

* Update neutron_plots.py

import uproot as ur

* fixed another bug in the neutron_plots.py

* different fit for the neutron energy corrections; also add YR requirements

* removed YR requirements from neutron plots; also used a different energy correction formula

* Update neutron_plots.py

import uproot as ur

* fixed another bug in the neutron_plots.py

* Update config.yml

Make sure the neutron::analyze stage actually runs.

* updated Snakefile

* added benchmark for neutron recon in ZDC

* added neutron_plots.py, updated Snakefile

* Update .gitlab-ci.yml

include the neutron benchmark in the ones running in gitlab

* Update config.yml

use correct generated momenta in parallelized jobs

* Update config.yml

used the correct configuration (craterlake) in the config.yml

* Update neutron_plots.py

* Update config.yml

* Update config.yml

used "touch" to force snakemake to not update files in the neutron:analyze phase

* added sigma generator script

* require lambda decay to occur before ZDC when generating sigma0 events

* Update gen_sigma_decay.cxx

* added Snakefile; benchmakr.json

* added sigma to global snakefile

* updated snake file to use the results directory

* updated sigma_plots.py

* use sim_output instead of results for large files

* Update benchmarks/sigma/config.yml

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update sigma_plots.py

* Update .gitlab-ci.yml

* Update .gitlab-ci.yml

* Update sigma_plots.py

* Update config.yml

increased time limit

* Update Snakefile

removed /   (not sure if this will change anything

* removed hardcoded config in sigma_plots.py

* added a space at the end of one line.  idk if this fixes anything

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

prevent crashing when one of the fits fails

* fix: use InclusiveKinematicsESigma in DIS benchmarks

* fix: use InclusiveKinematicsESigma in dis_electrons.cxx

* fix: keep title eSigma

* Create test_lambda_recon.py

* added lambda decay generator file

* added Snakefile

* working version with snakemake

* added config.yml

* .gitlab-ci.yml: include local benchmarks/lambda/config.yml

* .gitlab-ci.yml: summary depends on lambda:results

* lambda/config.yml: fix job name

* Snakefile: fix path to script

* Snakefile: fix another path to a script

* Update gen_lambda_decay.cxx

make sure that the lambda decay is before the ZDC front face.

* Update gen_lambda_decay.cxx

corrected the position of the ZDC front face

* Update benchmarks/lambda/Snakefile

Co-authored-by: Dmitry Kalinkin <dkalinkin@bnl.gov>

* Update Snakefile

Reduced number of events to be simulated/reconstructed for high energy lambda

* fixed issue with running Snakefile

* Update config.yml

attempt to fix issue with config.yml

* Update lambda_plots.py

number shape parameters per cluster changed from 10 to 7 (in response to the change in EICrecon which stores the axis as intrinsic theta/phi instead of iin the shape parameters, https://github.com/eic/EICrecon/commit/80866b3335cfeff59a47423a31c875b81ed492b7

 )

* Update config.yml

add "ls" to check if the files have been created

* Update Snakefile

reduce number of events that need to be generated (so that the test will take less time)

* Update Snakefile

use "results/lamdba" in the location for the input/output in the Snakefile

* Update config.yml

added "results/lambda/"

* Update lambda_plots.py

included "results/lambda" in the path where it looks for files

* Update Snakefile

added -p

* Update config.yml

removed ls statements

---------

Co-authored-by: Dmitry Kalinkin <dkalinkin@bnl.gov>

* dis/analysis/jets.cxx: update from the latest code

* dis/config.yml: add back jets bechmarks

* update benchmark

* jets.cxx: add missing includes

* jets.cxx: fix string concatenation

* place plots to jets/

* update instruction

Co-authored-by: Sebouh Paul <sebouh.paul@gmail.com>

Last time we had to change this in 
https://github.com/eic/physics_benchmarks/commit/cfdbaeabef58c1debfa7260d6a4315c02ba4dce7