added fadc debug option to shms hodoscopes

* Added Error flag histograms, and relabelled some histogram axes for clarity in
SHMS Hodo test stand DEF-File

* Put some comments

Rename some axes labels and put useful comments regarding the cuts made to obtain GOOD Variables (#159)

Rename some axes labels for SHMS Aero DEF Files, and included som useful comments regarding the cuts made to get good variables (#158)

included block T.shms.* in the calorimeter test stand def file, and relabbeled som axes for clarity (#157)

-Rename some axes labels for clarity, and put useful comments regarding the cuts that were made to obtain good variables (#156)

Add calibration code for the SHMS aerogel detector

-Added "Good": Occupancy, Multiplicity, ADC Pulse Pedestals/Times/int…

-Added "Good": Occupancy, Multiplicity, ADC Pulse Pedestals/Times/integrals/amplitudes, TdcUncorrTimes, TdcCorrTime, and TdcTOFCorrTimes to the hodoscope test stand def file

* Add summer 2017 software analysis workshop example

* Add summer 2017 software analysis workshop example for real this time

* May 26, 2017 -- Long overdue push, some old Calibration Scripts but also the presently working analysis and Calibration scripts in Final Scripts directory.

* Updated Calibration with pulseAmp script.

* root file

* added Rootfiles

* Rewrote pulseAmp analysis, works much better now.
Included Degtiarenko's code to evaluate as a better alternative.
Started the write up for the actual calibration process

* Updated Analysis scripts, started deciphering Fortran code.

* test

* TEST

* test

* bla

* blah

* boring git stuff

* git stuff

* Made the master branch much more organized/presentable

* Finializing directory. Modified how calibration appears/output the calibration constants

* Updated the analysis and visualization scripts for NGC.

* Version of Calibration suitable for the Summer presentation.

* Removed debugging line

Modify TEMPLATES/pstackana.template

1) Added information on time of run and BCMs
2) Conversion of BCM scalers to current is done with constants
   roughly determined from data. Eventually need to
   update to use parameters.

choosing an event range.

* minor fixes to shms dc calib

* Changed the binning scheme in the shms calibrations such that at 0 ns (tzero-corrected) will be centerd about its corresponding bin, and not at an edge.

Dc calib

new script to apply the tzero correction as the plane drift times are filled. For each entry filled, the corresponding wire and plane hit are obtained, and the tzero corresponding to the wire hit is applied.

changed SHMS DC binning to be consistent with calibration. Changed 2ns/bin to 1ns/bin in drift time histos. (#145)

* commented out a cout line

* increased the total number of bins by two, since the bin width was reduced from 2ns to 1ns. This change produced better drift distances

* reduced drift time bin width to 1ns.

* reduced bin width to 1 ns/bin

* reduced bin width to 1 ns /bin

* Updated parameter files

Shms dc calib

* added README file

* added README.md file for SHMS DC Calibrations

* Added readme file for shms dc calibration

* Added minor fix to the script to fix compilationerror in root 5.34.36

* minor fix

* get_tzero_per_wire_param.C

* fix to be compatible with root 5.34.36

* fix minor issues

* added stricter restriction on good t0 selection

* added option to read input file and event number to loop over

* added option to read input file and number of entries to analyze

* swapped x:y axes in 2d plots to display drift times vs. wire number, and added labels to the axes

* minor change in output file name

* added option to read filename, and changed the naming scheme of the output .root and .dat files produced

* added option to read input file and number of events, also changed naming of input and output .dat files to be consistent with the other changes made so far.

* added option to read input file and number of entries

* added option to read input file and number of events, and also added axes titles to histos

* added option to read input file and numberof events, also modified name of .root file being read

* added axes titles to histos

* added option to promt user to enter input file, run number, and number events to analyze. Also made a few improvements overall

New optics reconstruction matrix for KPP run

COSY was run with Q2 set to 0.985*( ideal setting)
which better matches the focal plane distributions.
New optics reconstruction matrix.

* -added script that will output a parameter file with individual tzero values (NOT per ribbon cable as before)

* -included the execution of 'get_tzero_per_wire.param' in steering script.

* -added precicion to the t0 calculation. Although the calculation involved the ratios of two 'doubles', the t0 came out to be an integer. This imprecision was corrected.

* -add minor fix

* added minor fix to read in corrected t0 values

* minor fix

* most up-to-date shms DC param files

Modify HMS and SHMS calorimeter calibration codes

latest naming conventions in hcana code.

       Change of tree branch names in THcShowerCalib.h and
       THcPShowerCalib.h.

* -Modified HMS Calorimeter Def-File Based on SHMS Calo Def File

* -Minor Fix to hms calo def file
-added h_fadc_debug.param to HMS Calorimeter general Parameters
-loaded fadc_debug param file in hms calorimeter test stand replay script