modified:   ../src/THcCherenkov.h
	modified:   ../src/THcCherenkovHit.h
	modified:   ../src/THcHitList.cxx
	modified:   ../src/THcHitList.h
	modified:   ../src/THcRawAdcHit.h
	modified:   ../src/include/hcana/HallC_Data.h

	modified:   THcCherenkov.cxx
	modified:   THcCherenkov.h
	modified:   THcHodoscope.cxx
	modified:   THcHodoscope.h
	modified:   include/HallC_LinkDef.h
	new file:   include/hcana/HallC_Data.h

- removed spdlog ( now in analyzer)
- added logging to THaAnalzyer (podd)

- Mixins defined in Logger.h
- Mixin used in base classes (THcDC is currently a good example)

Added a few more spdlog loggers

Added logging to many.

- Added logging to hodoscope, aerogel hitlist and detectormap
- Working on scandalizer features.

Added logging.

Added more logging.

added more logging.

More logging.

	new file:   Shower2.cxx
	new file:   Shower2.h
	modified:   THcCherenkov.cxx
	modified:   THcCherenkov.h
	modified:   THcShowerArray.h
	modified:   include/HallC_LinkDef.h

Add new ntuple variables
goodAdcMult == the number of hits in raw ADc for that channel
goodAdcHitUsed == which hit number of the raw ADC hits passed the
                      the ADC time window cut

Modified fAdcTimeWindowMin  and fAdcTimeWindowMax to be arrays
  that are the size of the number of Cerenkov pmts.

   First hit above this cut is taken as the reference time.
   Cuts are per detector and read as an optional parameter in
   each detector class.  TDCs and Flash ADC times have separate cuts.

Implement a second method of selecting best reference time.
  If InitHitList is passed a possitive reference time cut,
    use the first reference time above that cut.  If none of the
    hits pass the cut, then no reference time is set
  If InitHitList is passed a negative cut, the cut is taken to be
    the absolute value of the cut, but a reference time is garuanteed
    to be set as long as there is at least one reference time hit.
    If none of the reference time hits pass the cut, then the last
    hit is taken to be the reference time.  (Should be the largest.)

Allow reference time cuts for all the spectrometer detector classes
  Hodoscopes, drift chambers, Aerogels, Gas Cherenkovs, Calorimeters

  Add End method to each detector that calls MissReport which
  prints the number of events with missing TDC and ADC reference times.

Add variable for the difference between the Hodoscope start time
and the ADC pulse time.

Select good adc hit based on window on this difference

  Each detector object will check the global variable X.present each
  event.  If X.present is false, it indicates that the parent
  spectrometer object determineted that this spectrometer is not in
  this event, and therefor reference times are not expected.  If
  X.present is false, then the reference time warning messages will
  be suppressed.

Fix typo in previous commit's THcCherenkov.cxx

Include methods for FADC conversions and apply to non-raw data objects in THcRawAdcHit

Add raw pulse time data object to Cherenkov detector classes

Add raw pulse time data object to shower detector classes

Add raw pulse time data object to hodoscope detector class

New parameters are added.  hallc_replay of 3/31/2017 or later is needed.

As of now, the size of the TClonesArray objects are hard-coded in the
respective header files. This is not okay in the long run. Ideally,
the size of the TClonesArrays should be defined by the parameter which
dictates how many readout detectors exist for the respective
detector. I tried doing this in the Init method however, podd
complained regarding the size of the TClonesArrays in the DEF-file
histograms. I was unsuccessful in my first attempt. This should be
addressed in the future even though things work for now.

Add array fADC_hit that is a flag if there is a hit in the ADC
fADC_hit is set in Decode method
The FADC has a threshold on accepting ADC hit
Modified CoarseProcess method to eliminate old FASTBUS bias in the analysis

 - Added new leafs to the hodoscope tree.
 - Added new leafs to the aerogel tree.
 - Added new leafs to cerenkov tree.
 - Added new leafs to the shower tree.

Left all the old leafs in there. Will need a careful cleanup...

  Adds tests to THcHodoscope fiducial tracking efficiency
  Adds tests to THcCherenkov for Cerenkov efficiency

  Use InitArrays method in THcCherenkov and THcAerogel
  Null out all array pointers in the InitArrays method and
  call that method from all constructors so that it is always
  safe to delete these arrays.

We have added a new parameter hcer_tot_pmts = 2 in hcana.param file.
It is equal to total number of PMTs in Cherenkov detector. With this
update, the THcCherenkov coarse process is complete. We have Raw adc,
pedestal subtracted adc, number of photo electrons and hits histograms
in the output root file for gas Cherenkov detector.

variables. Total photo electrons, total hits of adc 1, total hits of adc 2
and total hits. With this update we have transformed the FORTRAN code of
file /engine/HTRACKING/h_trans_cer.f to /hcana/ser/THcCherenkov.cxx

NOTE: The pedestal value in ENGINE is an integer but in hcana it is a
flaoting number. So it changes the pedestal substracted vlues of adc 1
and adc 2 and the number of photo electrons of adc 1 and 2 by very small
fraction. The difference of total photo electrons between ENGINE and hcana
is not more than 0.005.

    Register some more variables for the tree
    Clear fNelem of some arrays, not fNhits.
    Print method to print Aerogel pedestals.
    Make Pedestal analysis a bit more like the ENGINE.
    Initialize counters

Added haero.param to general.param.