Set hodoscopes to standard ADC mode for example hodtest.C script
  badcraw_pos and badcraw_neg always true if not Dynamic pedestal mode
  Don't crash in hodoscope if there is no Cherenkov.

  Will correct sync problems in d(e,e'p) run coin_all_3302.dat and SIDIS
  run coin_all_3621.dat.

To correct 3621, run slipstudy.C as is.  To correct 3302, change kTRUE
to kFALSE in the line:

synccheck->SetResync(kTRUE);

  Usual trigger time offsets for the 3 FADC crates are set
  in slipstudy.C

  This will add the Hall C parameter DB (gHCParms) to the Run_Data object
  The GetHCParms method will retrieve the parameter DB

  So that hodtest.C keeps working

  An example GUI to display the periodic report during the analysis
  is included.  (rustats.tcl).  The commands to startup the GUI
  are in hodtest.C, but commented out.

  With this commit, db_run.dat is not needed in hcana
  If THcRunParms is used, hcana will get the beam momentum from the
  parameter "gpbeam" instead of db_run.dat.  To use, use the
  THaRun::SetRunParamClass method to set the run parameter class
  to "THcRunParameters".

  THaRun* run = new THaRun(RunFileName);
  run->SetRunParamClass("THcRunParameters");

  New required Cerenkov and Aerogel parameters in hcana.def
  cuts and output.def updates
  remove now unsupported mirror efficiencies from report.template

   Used by hodtest.C example (for old HMS data)

  to account for changes to Cerenkov class

in THcDrifthChamberPlane::DefineVariable and output.def

  Default is to use new "invadc" parameters.  Use old style
  by setting Xtofusinginvadc=0

Lot's of changes to
 THcScintillator::ProcessHits
 THcHodoscope::EstimateFocalPlaneTimes
 THcHodoscope::FineProcess

  Rename ScalerLoc so it doesn't conflict with class of same name in podd
  Ignore .pcm files
  Makefile does version check for root 6
  Address warnings in hodtest.C

  Fix fptime formulae in output.def
  Remove unused parameter from THcHodoEff
  Remove undefined parameter from report.def

   H.hod.hgoodstarttime -> H.hod.goodstarttime

calorimeter.

negative side PMT signals from the HMS and SOS calorimeters.

    Changes in the Ycor method of the THcShower class, and in
    examples/PARAM/hcana.param input file.

Minimm value of normalized energy  fNormETot and minum value of number of
cherenkov photo electrons, fNCerNPE, is added to parameter files for the
calculation good scintillator event for tracking efficiency.
They are  optional parameters

fScinShould and fScinDid are set to 0 or 1
and only incrmented when Shower and Cerenkov detectors are setup.

If calorimeter and cherenkov is not added to SOS or HMS then it prints
a warning message and does not calcualte the efficiency for that
spectrometer.

Minimm value of normalized energy and minum value of number of
cherenkov photo electrons is added to parameter files for the
calculation of tracking efficiency.

  Variable found in a report template is first tested to see if it is a
  Hall C style parameter (in gHcParms).  If not, then tested to see if it
  is a global variable (in gHaVars).

  Clean up THcShower.h and THcShower.cxx.
  typedef vector<THcShowerHit*> THcShowerHitList by
  typedef set<THcShowerHit*> THcShowerHitList.
  Remove inheritance of class THcShowerCluster from THcShowerHitList.
  Define THcShowerCluster as THcShowerHitList, aka set<THcShowerHit*>.
  Remove inheritance of class THcShowerClusterList from
        THcShClusterList, a.k.a. vector<THcShowerCluster*> container.
  Define THcShowerClusterList as vector<THcShowerCluster*>.
  Rename THcShowerHitSet by THcShowerHitList.
  Rename HitList (related to the HMS calorimeter) to HitSet.
  Add operator< in THcShowerHit class, in order to have THcShowerHitSet
    objects to be properly sorted.