H.hod.hgoodstarttime -> H.hod.goodstarttime

calorimeter.

negative side PMT signals from the HMS and SOS calorimeters.

    Changes in the Ycor method of the THcShower class, and in
    examples/PARAM/hcana.param input file.

Minimm value of normalized energy  fNormETot and minum value of number of
cherenkov photo electrons, fNCerNPE, is added to parameter files for the
calculation good scintillator event for tracking efficiency.
They are  optional parameters

fScinShould and fScinDid are set to 0 or 1
and only incrmented when Shower and Cerenkov detectors are setup.

If calorimeter and cherenkov is not added to SOS or HMS then it prints
a warning message and does not calcualte the efficiency for that
spectrometer.

Minimm value of normalized energy and minum value of number of
cherenkov photo electrons is added to parameter files for the
calculation of tracking efficiency.

  Variable found in a report template is first tested to see if it is a
  Hall C style parameter (in gHcParms).  If not, then tested to see if it
  is a global variable (in gHaVars).

  Clean up THcShower.h and THcShower.cxx.
  typedef vector<THcShowerHit*> THcShowerHitList by
  typedef set<THcShowerHit*> THcShowerHitList.
  Remove inheritance of class THcShowerCluster from THcShowerHitList.
  Define THcShowerCluster as THcShowerHitList, aka set<THcShowerHit*>.
  Remove inheritance of class THcShowerClusterList from
        THcShClusterList, a.k.a. vector<THcShowerCluster*> container.
  Define THcShowerClusterList as vector<THcShowerCluster*>.
  Rename THcShowerHitSet by THcShowerHitList.
  Rename HitList (related to the HMS calorimeter) to HitSet.
  Add operator< in THcShowerHit class, in order to have THcShowerHitSet
    objects to be properly sorted.

     Edit debug outputs in THcSHower and THcShowerPlane classes. Group
     outputs preferably by the end of methods, for smooth code
     flow. Structure tests of outputs for easy reading.

first track from the HMS shower counter code.

    Remove variables and code related to the maximum cluster of hits,
    and association of a cluster to the 1-st spectrometer track in
    THcShower.h and THcShower.cxx. Those were used for testing of the
    code, not needed any more.

track in Engine and the golden track in hcana.

      Add directory examples/gtrk_e holding the code.

Access the energy of the golden track from THaGoldenTrack.

    Include THaTrack.h in THaGoldenTrack.h.
    Add GetEnergy method in THaGoldenTrack.h.
    Define variable name "e" for the energy of golden track in THaGoldenTrack.C.

debug info should be suppressed in the main develop branch

shower counter's FineProcess.

       Remove THcHallCSpectrometer::TrackEnergies method.
       Add GetShEnergy call for each tack in THcShower::fineProcess.

In hcal_calib/hcal_replay_cuts.def:
   add one_clust condition;
   activate good_beta condition (defined for run 52949);
   define 2 versions of the Reconstruct_master cut, one for initial
   calibration and another for iterative calibration.

    Time difference variables now defined in output.def

Remove track related variables from the HMS Shower class, use ntuples
from the track (H.tr) block instead in the HMS calorimeter calibration
scripts.

- Remove a block of duplicated track related variables from the
THcShower class which have been added for calorimeter calibration
purposes.

- In hcal_calib directory, replace those variables with correspondent
variables from H.tr block in the calorimeter calibration class
(THcShowerCalib.h), in the cut (hcal_replay_cuts.def) and output
(output_hcal_replay.def) definitions.

      Compute time differences between planes
      Calculate beta and Chisquard for each track in the hodoscope.
      New variables: fBeta, fBetaChisq
      New histograms for time differences

Fixed the wrong raster channel assignment in raster_jun04.map. The X and Y channels needed to be switched.
In both map files, changed the plane assignments of all the raster channels to be 1 instead of 1,2,3,4. This then follows the ENGINE convention.

Added the raw raster ADC values to the histos and trees. Modified the ranges and binning of the
histogram definitions in output_bpw_.def accordingly.

This is a script created by Stephen Wood to convert engine type channel maps into hcana type mapfiles. Right now, this is only used when doing hcana and engine comparision for the raster.

In raster_jun04.map, reassigned the raster channels into a single plane instead of different planes.
This makes it easier for comparision with the engine.
Modified raster_test.C to analyze run 52947 in the cache directory.
Some minor clean up in the THcRaster.cxx class- removing comments and unused variables.

Read gpbeam in THcRaster::ReadDatabase
Add jan05.kinematics
Modified DBASE/raster_test.database to fill g_ctp_kinematics_filename
with DBASE/jan05.kinematics
Modified raster_test.C to load g_ctp_kinematics_filename

  12, 1, 1, 0 !ADC ROC#1 Sl#13 Ch#12 Fast Raster X-sync
  13, 2, 1, 1 !ADC ROC#1 Sl#13 Ch#13 Fast Raster X-signal
  14, 3, 1, 2 !ADC ROC#1 Sl#13 Ch#14 Fast Raster Y-sync
  15, 4, 1, 3 !ADC ROC#1 Sl#13 Ch#15 Fast Raster Y-signal
to
  12, 1, 1, 0 !ADC ROC#1 Sl#13 Ch#12 Fast Raster X-sync
  13, 1, 1, 1 !ADC ROC#1 Sl#13 Ch#13 Fast Raster X-signal
  14, 1, 1, 2 !ADC ROC#1 Sl#13 Ch#14 Fast Raster Y-sync
  15, 1, 1, 3 !ADC ROC#1 Sl#13 Ch#15 Fast Raster Y-signal
This works and it makes easier for the mapedit_rasterbcm.pl script to propagate these changes into ENGINE type map files.

  Files with the prefix raster_ are coppies of original *.database,
  and *.param files which now includes changes nessacery for
  decoding raster data. I created seperate files for these because I
  need to merge this code upstream before I can compare the raster
  decoding results with that of the analyzer. For e.g. the map files are
  different from the original map files. So Steve needs to create a perl
  script that can propgate these changes in the map files to the map
  file of the analyzer inorder for me to do the analyzer hcana
  comparision. Once the comparision is done and we are satisifies with
  the results, we will merge the changes with the original files and
  remove the files with the prefix raster_*.

  gbeam.param now included by general.param.  No need to load
  a separate parameter set to test raster/BPM code.

  examples/MAPS/raster_jun04.map adds new detector IDs for the raster
  and BPMs as follows:

Add the following IDs to the misc elements,
BEAM
 RASTER_ID= 18          ADC
 BPM_ID= 19             ADC

In the channel section did the following modification:
 sub , plane, counter, sig
  14, 1, 13, 1 !ADC ROC#1 Sl#15 Ch#14 Fast Raster X-sync
  15, 1, 14, 2 !ADC ROC#1 Sl#15 Ch#15 Fast Raster X-signal
  12, 1, 15, 3 !ADC ROC#1 Sl#15 Ch#12 Fast Raster Y-sync
  13, 1, 16, 4 !ADC ROC#1 Sl#15 Ch#13 Fast Raster Y-signal

  THcRasterRawHit class to helps with the decoding of the raster
     signals via THcHitList class.
  THcRasteredBeam class derives from THaApparatus to handle rastered beam.
  Modify Makefile and HallC_LinkDef.h to compile new classes

Added coding for read parameters from the hcana.param file.

In the hcana.param file added the four raster channels
graster_channels = "xsync xsig ysync ysig"

Created raster_test.C script to run the analyzer for raster code testing purpose. This was coppied from the hodotest.C

We have added a new parameter hcer_tot_pmts = 2 in hcana.param file.
It is equal to total number of PMTs in Cherenkov detector. With this
update, the THcCherenkov coarse process is complete. We have Raw adc,
pedestal subtracted adc, number of photo electrons and hits histograms
in the output root file for gas Cherenkov detector.

  Because git under Eclipse messes up soft links
  Use #include directive so desired file gets read