Temporarily set THcHodoscope.cxx so that only the first three planes are used to calculate the focal
plane time and beta.
In THcHodoscope , Modified format for writing out the dump file used in hodo calibration.
Add cosmicflag to THcScintillatorPLane so the corrected time is done right for cosmics.
Modified hc_hodo_calib/tofcal.f so that it uses detector 10 as the reference
and that it writes out better defualts for parameters in there are not enough events for a PMT.

PSE125 holds information about setting of F250 modules. Now this
information is used to set `fNPedestalSamples` and `fNPeakSamples`
parameters of `THcRawAdcHit`.

This is done through `THcHitList`, since it has information about
which crate and module each channel is in. Currently, the information
is set for each event, because of the hitlist and analyzer design.

I added the neccessary support for these changes to all raw hit
classes.

Corrected warning message for missing refchan to correctly display reference channel.
Modified warningg message for missing refindex to include information about reference channel.

  Get this information if hit says it is looking for ADC info
  and the module reports that it is multifunction

  Fix bad Addmodule argument (refchan)
  Print warning if expected reference time is missing
     (Probably means event is bad)

  Separate methods for ref time subtracted and raw hits

  Base class THcRawHit has null GetReference method.  Returns
  zero.
  THcRawDCHit will get the reference time if it was specified in the map file.
  It is up to the detector class to use the reference time to subtract off
  pipeline TDC jitter.

  For the most part this is making sure that the loop variable in
  a for loop is of the same type as the variable that it is compared
  against (Often a UInt_t).

This reverts commit e9ce1040.

Conflicts:
	src/THcHallCSpectrometer.cxx

  For the most part this is making sure that the loop variable in
  a for loop is of the same type as the variable that it is compared
  against (Often a UInt_t).

TClonesArray ConstructedAt method.

Raw hit class for drift chambers and skeleton drift chamber that prints
out drift chamber package hits.

Move Compare method from THcHodoscopeHit to ThcRawHit since it should
work for any derived class.

Get detector name -> ID mapping from the map file comments

TClonesArray ConstructedAt method.

THcHodoscope, a multiplane scintillator array.  Make a Hall
C style spectrometer (so that default Hall A detectors are not
included.)  Can read a Hall C data file and print out hodoscope hits
where the left/right TDC/ADC are matched up per counter.

so that each detector can have access to it to build it's own detector Map
from the Hall C style detector map.

rather than relying on a modified THaDetectorBase.  Just commit is
just the renaming and deleting of files we don't need, no code changes.

Some progress on generic Decode method.

Work on Decode to hitlist method in DetectorBase