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///////////////////////////////////////////////////////////////////////////////////////
//                                                                                   //
// THcCherenkov                                                                      //
//                                                                                   //
// Class for an Cherenkov detector consisting of onw pair of PMT's                   //
//                                                                                   //
// Zafar Ahmed. Updated on December 24 2013.                                         //
// Four more variables are added.                                                    //
//                                                                                   //
// npe               Total Number of photo electrons                                 //
// hit_1             Total hits in adc 1                                             //
// hit_2             Total hits in adc 2                                             //
// hit               Total hits in adc 1 and 2                                       //
//                                                                                   //
// Comment:No need to cahnge the Map file but may need to change the parameter file  //
//                                                                                   //
// This code is written for following variables:                                     //
//                                                                                   //
// Variable Name     Description                                                     //
// adc_1             Raw value of adc 1                                              //
// adc_2             Raw value of adc 2                                              //
// adc_p_1           Pedestal substracted value of adc 1                             //
// adc_p_2           Pedestal substracted value of adc 2                             //
// npe_1             Number of photo electrons of adc 1                              //
// npe_2             Number of photo electrons of adc 2                              //
//                                                                                   //
///////////////////////////////////////////////////////////////////////////////////////

#include "THcCherenkov.h"
#include "TClonesArray.h"
#include "THcSignalHit.h"
#include "THaEvData.h"
#include "THaDetMap.h"
#include "THcDetectorMap.h"
#include "THcGlobals.h"
#include "THaCutList.h"
#include "THcParmList.h"
#include "THcHitList.h"
#include "VarDef.h"
#include "VarType.h"
#include "THaTrack.h"
#include "TClonesArray.h"
#include "TMath.h"

#include "THaTrackProj.h"

#include <cstring>
#include <cstdio>
#include <cstdlib>
#include <iostream>

using namespace std;

using std::cout;
using std::cin;
using std::endl;

#include <iomanip>
using std::setw;
using std::setprecision;

//_____________________________________________________________________________
THcCherenkov::THcCherenkov( const char* name, const char* description,
				  THaApparatus* apparatus ) :
  THaNonTrackingDetector(name,description,apparatus)
{
  // Normal constructor with name and description
  fPosADCHits = new TClonesArray("THcSignalHit",16);

//  fTrackProj = new TClonesArray( "THaTrackProj", 5 );
}

//_____________________________________________________________________________
THcCherenkov::THcCherenkov( ) :
  THaNonTrackingDetector()
{
  // Constructor
}

//_____________________________________________________________________________
THcCherenkov::~THcCherenkov()
{
  // Destructor
  delete [] fPosGain;
  delete [] fPosPedLimit;
  delete [] fPosPedMean;
}

//_____________________________________________________________________________
THaAnalysisObject::EStatus THcCherenkov::Init( const TDatime& date )
{
  static const char* const here = "Init()";

  cout << "THcCherenkov::Init " << GetName() << endl;

  // Should probably put this in ReadDatabase as we will know the
  // maximum number of hits after setting up the detector map
  InitHitList(fDetMap, "THcCherenkovHit", 100); // 100 is max hits

  EStatus status;
  if( (status = THaNonTrackingDetector::Init( date )) )
    return fStatus=status;

  // Will need to determine which apparatus it belongs to and use the
  // appropriate detector ID in the FillMap call
  if( gHcDetectorMap->FillMap(fDetMap, "HCER") < 0 ) {
    Error( Here(here), "Error filling detectormap for %s.", 
	     "HCER");
      return kInitError;
  }

  return fStatus = kOK;
}

//_____________________________________________________________________________
Int_t THcCherenkov::ReadDatabase( const TDatime& date )
{
  // This function is called by THaDetectorBase::Init() once at the beginning
  // of the analysis.

  cout << "THcCherenkov::ReadDatabase " << GetName() << endl; // Ahmed

  char prefix[2];

  prefix[0]=tolower(GetApparatus()->GetName()[0]);
  prefix[1]='\0';

  fNelem = 2;      // Default if not defined                                                                    
  
  fPosGain = new Double_t[fNelem];
  fPosPedLimit = new Int_t[fNelem];
  fPosPedMean = new Double_t[fNelem];
  
  DBRequest list[]={
    {"cer_adc_to_npe", fPosGain, kDouble, fNelem},              // Ahmed
    {"cer_ped_limit", fPosPedLimit, kInt, fNelem},              // Ahmed
    {0}
  };
  gHcParms->LoadParmValues((DBRequest*)&list,prefix);

  fIsInit = true;

  // Create arrays to hold pedestal results
  InitializePedestals();

  return kOK;
}

//_____________________________________________________________________________
Int_t THcCherenkov::DefineVariables( EMode mode )
{
  // Initialize global variables for histogramming and tree

  cout << "THcCherenkov::DefineVariables called " << GetName() << endl;

  if( mode == kDefine && fIsSetup ) return kOK;
  fIsSetup = ( mode == kDefine );
  
  // Register variables in global list

  // Do we need to put the number of pos/neg TDC/ADC hits into the variables?
  // No.  They show up in tree as Ndata.H.aero.postdchits for example

  RVarDef vars[] = {
    {"adc_1",    "Raw First ADC Amplitude",                  "fA_1"},
    {"adc_2",    "Raw Second ADC Amplitude",                 "fA_2"},
    {"adc_p_1",  "Pedestal Subtracted First ADC Amplitude",  "fA_p_1"},
    {"adc_p_2",  "Pedestal Subtracted Second ADC Amplitude", "fA_p_2"},
    {"npe_1",    "PEs of First Tube",                        "fNpe_1"},
    {"npe_2",    "PEs of Second Tube",                       "fNpe_2"},
    {"npe",      "Total number of PEs",                      "fNpe"},
    {"hit_1",    "ADC hits First Tube",                      "fNHits_1"},
    {"hit_2",    "ADC hits Second Tube",                     "fNHits_2"},
    {"hit",      "Total ADC hits",                           "fNHits"},
    {"posadchits", "List of Positive ADC hits","fPosADCHits.THcSignalHit.GetPaddleNumber()"},
    { 0 }
  };

  return DefineVarsFromList( vars, mode );
}
//_____________________________________________________________________________
inline 
void THcCherenkov::Clear(Option_t* opt)
{
  // Clear the hit lists
  fPosADCHits->Clear();

  // Clear Cherenkov variables  from h_trans_cer.f
  
  fNhits = 0;	     // Don't really need to do this.  (Be sure this called before Decode)

  fA_1 = 0;
  fA_2 = 0;
  fA_p_1 = 0;
  fA_p_2 = 0;
  fNpe_1 = 0;
  fNpe_2 = 0;
  fNpe = 0;
  fNHits_1 = 0;
  fNHits_2 = 0;
  fNHits = 0;

}

//_____________________________________________________________________________
Int_t THcCherenkov::Decode( const THaEvData& evdata )
{
  // Get the Hall C style hitlist (fRawHitList) for this event

  if(gHaCuts->Result("Pedestal_event")) {

    AccumulatePedestals(fRawHitList);

    fAnalyzePedestals = 1;	// Analyze pedestals first normal events
    return(0);
  }

  if(fAnalyzePedestals) {
     
    CalculatePedestals();
   
    fAnalyzePedestals = 0;	// Don't analyze pedestals next event
  }


  Int_t ihit = 0;
  Int_t nPosADCHits=0;
  while(ihit < fNhits) {
    THcCherenkovHit* hit = (THcCherenkovHit *) fRawHitList->At(ihit);
    
    // ADC positive hit
    if(hit->fADC_pos >  0) {
      THcSignalHit *sighit = (THcSignalHit*) fPosADCHits->ConstructedAt(nPosADCHits++);
      sighit->Set(hit->fCounter, hit->fADC_pos);
    }

    ihit++;
  }
  return ihit;
}

//_____________________________________________________________________________
Int_t THcCherenkov::ApplyCorrections( void )
{
  return(0);
}

//_____________________________________________________________________________
Int_t THcCherenkov::CoarseProcess( TClonesArray&  ) //tracks
{
  /* 
     ------------------------------------------------------------------------------------------------------------------
     h_trans_cer.f code:

      hcer_num_hits = 0                                      <--- clear event
      do tube=1,hcer_num_mirrors                             
        hcer_npe(tube) = 0.                                  <--- clear event
        hcer_adc(tube) = 0.                                  <--- clear event
      enddo
      hcer_npe_sum = 0.                                      <--- clear event
      do nhit = 1, hcer_tot_hits                             <--- loop over total hits. Very first line of this method
        tube = hcer_tube_num(nhit)                           <--- tube is number of PMT on either side and it is this 
	                                                          line:  Int_t npmt = hit->fCounter - 1
        hcer_adc(tube) = hcer_raw_adc(nhit) - hcer_ped(tube) <--- This is done above:
                                                                  fA_Pos_p[npmt] = hit->fADC_pos - fPosPedMean[npmt];
                                                                  fA_Neg_p[npmt] = hit->fADC_neg - fNegPedMean[npmt];
        if (hcer_adc(tube) .gt. hcer_width(tube)) then       <--- This needs to convert in hcana
          hcer_num_hits = hcer_num_hits + 1
          hcer_tube_num(hcer_num_hits) = tube
          hcer_npe(tube) = hcer_adc(tube) * hcer_adc_to_npe(tube)
          hcer_npe_sum = hcer_npe_sum + hcer_npe(tube)
        endif
      enddo
     ------------------------------------------------------------------------------------------------------------------
    */
  for(Int_t ihit=0; ihit < fNhits; ihit++) {
    THcCherenkovHit* hit = (THcCherenkovHit *) fRawHitList->At(ihit); // nhit = 1, hcer_tot_hits

    // Pedestal subtraction and gain adjustment

    // An ADC value of less than zero occurs when that particular
    // channel has been sparsified away and has not been read. 
    // The NPE for that tube will be assigned zero by this code.
    // An ADC value of greater than 8192 occurs when the ADC overflows on
    // an input that is too large. Tubes with this characteristic will
    // be assigned NPE = 100.0.
    Int_t npmt = hit->fCounter - 1;                             // tube = hcer_tube_num(nhit)
    // Should probably check that npmt is in range
    if ( ihit != npmt )
      cout << "ihit != npmt " << endl;

    if ( npmt == 0 ) {
      fA_1 = hit->fADC_pos;
      fA_p_1 = hit->fADC_pos - fPosPedMean[npmt];
      if ( ( fA_p_1 > 50 ) && ( hit->fADC_pos < 8000 ) ) {
	fNpe_1 = fPosGain[npmt]*fA_p_1;
      } else if (  hit->fADC_pos > 8000 ) {
	fNpe_1 = 100.0;
      } else {
	fNpe_1 = 0.0;
      }
    }
    
    if ( npmt == 1 ) {
      fA_2 = hit->fADC_pos;
      fA_p_2 = hit->fADC_pos - fPosPedMean[npmt];
      if ( ( fA_p_2 > 50 ) && ( hit->fADC_pos < 8000 ) ) {
	fNpe_2 = fPosGain[npmt]*fA_p_2;
      } else if (  hit->fADC_pos > 8000 ) {
	fNpe_2 = 100.0;
      } else {
	fNpe_2 = 0.0;
      }
    }
    
    if ( npmt == 0 ) {
      fNpe += fNpe_1;
      fNHits += fNHits_1;
    }
    
    if ( npmt == 1 ) {
      fNpe += fNpe_2;
      fNHits += fNHits_2;
    }
    
  ApplyCorrections();

  return 0;
}

//_____________________________________________________________________________
Int_t THcCherenkov::FineProcess( TClonesArray& tracks )
{

  return 0;
}

//_____________________________________________________________________________
void THcCherenkov::InitializePedestals( )
{
  fNPedestalEvents = 0;
  fMinPeds = 500; 		// In engine, this is set in parameter file
  fPosPedSum = new Int_t [fNelem];
  fPosPedSum2 = new Int_t [fNelem];
  fPosPedLimit = new Int_t [fNelem];
  fPosPedCount = new Int_t [fNelem];

  fPosPed = new Double_t [fNelem];
  fPosThresh = new Double_t [fNelem];
  for(Int_t i=0;i<fNelem;i++) {
    fPosPedSum[i] = 0;
    fPosPedSum2[i] = 0;
    fPosPedLimit[i] = 1000;	// In engine, this are set in parameter file
    fPosPedCount[i] = 0;
  }

}

//_____________________________________________________________________________
void THcCherenkov::AccumulatePedestals(TClonesArray* rawhits)
{
  // Extract data from the hit list, accumulating into arrays for
  // calculating pedestals

  Int_t nrawhits = rawhits->GetLast()+1;

  Int_t ihit = 0;
  while(ihit < nrawhits) {
    THcCherenkovHit* hit = (THcCherenkovHit *) rawhits->At(ihit);

    Int_t element = hit->fCounter - 1;
    Int_t adcpos = hit->fADC_pos;
    if(adcpos <= fPosPedLimit[element]) {
      fPosPedSum[element] += adcpos;
      fPosPedSum2[element] += adcpos*adcpos;
      fPosPedCount[element]++;
      if(fPosPedCount[element] == fMinPeds/5) {
	fPosPedLimit[element] = 100 + fPosPedSum[element]/fPosPedCount[element];
      }
    }
    ihit++;
  }

  fNPedestalEvents++;

  return;
}

//_____________________________________________________________________________
void THcCherenkov::CalculatePedestals( )
{
  // Use the accumulated pedestal data to calculate pedestals
  // Later add check to see if pedestals have drifted ("Danger Will Robinson!")
  //  cout << "Plane: " << fPlaneNum << endl;
  for(Int_t i=0; i<fNelem;i++) {
    
    // Positive tubes
    fPosPed[i] = ((Double_t) fPosPedSum[i]) / TMath::Max(1, fPosPedCount[i]);
    fPosThresh[i] = fPosPed[i] + 15;

    //    cout << i+1 << " " << fPosPed[i] << " " << fNegPed[i] << endl;

    // Just a copy for now, but allow the possibility that fXXXPedMean is set
    // in a parameter file and only overwritten if there is a sufficient number of
    // pedestal events.  (So that pedestals are sensible even if the pedestal events were
    // not acquired.)
    if(fMinPeds > 0) {
      if(fPosPedCount[i] > fMinPeds) {
	fPosPedMean[i] = fPosPed[i];
      }
    }
  }
  //  cout << " " << endl;
  
}
void THcCherenkov::Print( const Option_t* opt) const {
  THaNonTrackingDetector::Print(opt);

  // Print out the pedestals

  cout << endl;
  cout << "Cherenkov Pedestals" << endl;

  // Ahmed
  cout << "No.   Pos" << endl;
  for(Int_t i=0; i<fNelem; i++){
    cout << " " << i << "    " << fPosPed[i] << endl;
  }

  cout << endl;
}

ClassImp(THcCherenkov)
////////////////////////////////////////////////////////////////////////////////