Due to the use of backquotes, the replacement script for mpirun/mpiexec commands would recursively call itself, effectively causing a fork bomb.

* gromacs: add v2019.6

* Update var/spack/repos/builtin/packages/gromacs/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix expect on linux

* Flake8

- Tell make about the source code path
- Install actual header files, not a wrapper with wrong paths
- Add a patch to prevent compiler warnings
- Improve description

* Fix detection of redhat enterprise compute node

* Add comma

* Remove space

* Add new version of libfabric that builds on macOS

See https://github.com/ofiwg/libfabric/issues/5339
Fixes https://github.com/spack/spack/issues/15244

Also reduced copy-paste of URLs with `url_for_version`.

* Address reviewer feedback

Signed-off-by: Howard Pritchard <howardp@lanl.gov>

* Fixups for jupyter

This PR fixes a few things for some jupyter related packages.

py-ipython:
- make the python depends_on statements reflect needs of different
  versions
- remove an unneeded conflicts directive

py-ipywidgets:
- add new version
- set version constraints for py-widgetsnbextension

py-jupyter-console
- add new version
- set python dependencies for versions as needed
- set version constraint for py-ipython
- set version constraints for py-prompt-toolkit

py-pyqt5
- build with py-sip

py-qtconsole
- add dependency on py-pyqt5

* Update var/spack/repos/builtin/packages/py-jupyter-console/package.py

Tweak version ranges.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-jupyter-console/package.py

Tweak version range.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Make py-pyqt5 a run dependency

Also, make formatting more consistent.

* Fix site_packages_dir

Change reference of site_packages_dir to self.site_packages_dir. Oddly,
this did not show up as a problem until I regenerated the module.

* Restore py-pyqt5 to previous state

* Explicitly set path to site_packages_dir

This change prevents an error when regenerating the py-pyqt5 module
file.

* Fix flake8 errors

* Make sure prefix is in join_path

* Fix flake8 errors

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fixed url for SLEPc package

* Fixed homepage url for SLEPc package

* New package: py-librosa

This PR adds the py-librosa package, along with new dependency packages
and some updates of existing dependency packages.

- new package: py-audioread
- new package: py-resampy
- new package: py-soundfile
- update package: py-numba
- update package: py-llvmlite

py-numba:
- add updated version
- adjust constraints

py-llvmlite:
- add updated version
- adjust constraints
- fix version specifications for llvm
- add environment function to set PIC

* Update var/spack/repos/builtin/packages/py-numba/package.py

Ah, yes, I see that `setuptools` is listed in the `install_requires` array. I missed that before.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Fix dependency

- Add dependency of py-soundfile depends on libsndfile
- Add new libsndfile package

* Add py-pytest-runner build dep

* Make numpy a variant for py-soundfile

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

When building gcc7 and gcc8 on RHEL6 with Spack and installing it as
a spack-available compiler, OpenBLAS will fail to compile because GCC
generates newer instructions than rhel6's `as` assembler knows about
(e.g. "vpermpd").

Building gcc8 with binutils succeeds, and it generates a GCC that can
then successfully build OpenBLAS. This is also expected to work for
gcc7 on RHEL6.

* Added version 0.12.0 to fix issue #15218

* Added dependencies specs with compatible versions

* Switched py-scipy dependency to variant (default F)

* Removed variant py-scipy and didn't add py-dask

* Fixed typo: missing '

* Update var/spack/repos/builtin/packages/py-pyfftw/package.py

Fixing typos from version ranges in dependencies.

Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>

* Update var/spack/repos/builtin/packages/py-pyfftw/package.py

Removed repeating dependency option.

Co-Authored-By: Axel Huebl <axel.huebl@plasma.ninja>

* Update var/spack/repos/builtin/packages/py-pyfftw/package.py

Limited version of py-numpy dependency to <2.0.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Adding an option to build the C api for Umpire.

This is useful if you need to link to a C code and you're using
a compiler suite that doesn't support fortran.

* Also updating the versions while I'm here.

* Adding conflict: Fortran requires C.

To ease transition and confusion, default to C-bindings being
present.  This shouldn't hurt anyone who is upgrading an existing
installation.

This allows packages to override the global connect_timeout.

This allows us to support higher-level concepts such as 'cookie' and
'timeout' without users having to specify curl options.

connect_timeout can be used to increase the time Spack waits for the
server to answer. This can be used to work around slow connections or
servers.

Fixes #14700

* CudaPackage: add support for Tesla K80 and older CUDA

* Flake8 fixes

* Fix cuda_arch when no arch is set

* Fine-tune cuda_arch=37,50 supported CUDA versions

* CUDA 6.5+ supports SM_37

* Add @svenevs as a maintainer

The py-pomegranate package is a dependency of py-cnvkit

This PR adds py-pymc3 and py-arviz as a dependency.

Details about ILP64 support: `INTERFACE64=1` are described on the [ARPACK-NG GitHub website](https://github.com/opencollab/arpack-ng).

Version 4.3.1 only works with Python3. Version 4.3.2 also works
with Python2. These constraints were not listed before and are added
by this commit.