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Commit 87e2e664 authored by David Orman's avatar David Orman Committed by Adam J. Stewart
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Features/mindthegap (#7648)

* added htslib 1.7 and checksum

* mindthegap:  New package
parent d414d302
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##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Mindthegap(CMakePackage):
"""MindTheGap is a software that performs integrated detection and
assembly of genomic insertion variants in NGS read datasets with
respect to a reference genome."""
homepage = "https://gatb.inria.fr/software/mind-the-gap/"
url = "https://github.com/GATB/MindTheGap.git"
version('2.0.2',
tags='v2.0.2',
git='https://github.com/GATB/MindTheGap.git',
submodules=True)
depends_on('zlib')
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