From 87e2e66417d078cc280a04f450b7c0d22daeef2f Mon Sep 17 00:00:00 2001
From: David Orman <orman@iastate.edu>
Date: Fri, 30 Mar 2018 15:21:14 -0500
Subject: [PATCH] Features/mindthegap (#7648)
* added htslib 1.7 and checksum
* mindthegap: New package
---
.../builtin/packages/mindthegap/package.py | 41 +++++++++++++++++++
1 file changed, 41 insertions(+)
create mode 100644 var/spack/repos/builtin/packages/mindthegap/package.py
diff --git a/var/spack/repos/builtin/packages/mindthegap/package.py b/var/spack/repos/builtin/packages/mindthegap/package.py
new file mode 100644
index 0000000000..a9b9fbdf7a
--- /dev/null
+++ b/var/spack/repos/builtin/packages/mindthegap/package.py
@@ -0,0 +1,41 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Mindthegap(CMakePackage):
+ """MindTheGap is a software that performs integrated detection and
+ assembly of genomic insertion variants in NGS read datasets with
+ respect to a reference genome."""
+
+ homepage = "https://gatb.inria.fr/software/mind-the-gap/"
+ url = "https://github.com/GATB/MindTheGap.git"
+
+ version('2.0.2',
+ tags='v2.0.2',
+ git='https://github.com/GATB/MindTheGap.git',
+ submodules=True)
+
+ depends_on('zlib')
--
GitLab