Set hodoscopes to standard ADC mode for example hodtest.C script
  badcraw_pos and badcraw_neg always true if not Dynamic pedestal mode
  Don't crash in hodoscope if there is no Cherenkov.

  So that hodtest.C keeps working

  New required Cerenkov and Aerogel parameters in hcana.def
  cuts and output.def updates
  remove now unsupported mirror efficiencies from report.template

  Default is to use new "invadc" parameters.  Use old style
  by setting Xtofusinginvadc=0

Lot's of changes to
 THcScintillator::ProcessHits
 THcHodoscope::EstimateFocalPlaneTimes
 THcHodoscope::FineProcess

calorimeter.

negative side PMT signals from the HMS and SOS calorimeters.

    Changes in the Ycor method of the THcShower class, and in
    examples/PARAM/hcana.param input file.

Minimm value of normalized energy  fNormETot and minum value of number of
cherenkov photo electrons, fNCerNPE, is added to parameter files for the
calculation good scintillator event for tracking efficiency.
They are  optional parameters

fScinShould and fScinDid are set to 0 or 1
and only incrmented when Shower and Cerenkov detectors are setup.

If calorimeter and cherenkov is not added to SOS or HMS then it prints
a warning message and does not calcualte the efficiency for that
spectrometer.

Minimm value of normalized energy and minum value of number of
cherenkov photo electrons is added to parameter files for the
calculation of tracking efficiency.

  Clean up THcShower.h and THcShower.cxx.
  typedef vector<THcShowerHit*> THcShowerHitList by
  typedef set<THcShowerHit*> THcShowerHitList.
  Remove inheritance of class THcShowerCluster from THcShowerHitList.
  Define THcShowerCluster as THcShowerHitList, aka set<THcShowerHit*>.
  Remove inheritance of class THcShowerClusterList from
        THcShClusterList, a.k.a. vector<THcShowerCluster*> container.
  Define THcShowerClusterList as vector<THcShowerCluster*>.
  Rename THcShowerHitSet by THcShowerHitList.
  Rename HitList (related to the HMS calorimeter) to HitSet.
  Add operator< in THcShowerHit class, in order to have THcShowerHitSet
    objects to be properly sorted.

     Edit debug outputs in THcSHower and THcShowerPlane classes. Group
     outputs preferably by the end of methods, for smooth code
     flow. Structure tests of outputs for easy reading.

debug info should be suppressed in the main develop branch

shower counter's FineProcess.

       Remove THcHallCSpectrometer::TrackEnergies method.
       Add GetShEnergy call for each tack in THcShower::fineProcess.

  Files with the prefix raster_ are coppies of original *.database,
  and *.param files which now includes changes nessacery for
  decoding raster data. I created seperate files for these because I
  need to merge this code upstream before I can compare the raster
  decoding results with that of the analyzer. For e.g. the map files are
  different from the original map files. So Steve needs to create a perl
  script that can propgate these changes in the map files to the map
  file of the analyzer inorder for me to do the analyzer hcana
  comparision. Once the comparision is done and we are satisifies with
  the results, we will merge the changes with the original files and
  remove the files with the prefix raster_*.

  gbeam.param now included by general.param.  No need to load
  a separate parameter set to test raster/BPM code.

  examples/MAPS/raster_jun04.map adds new detector IDs for the raster
  and BPMs as follows:

Add the following IDs to the misc elements,
BEAM
 RASTER_ID= 18          ADC
 BPM_ID= 19             ADC

In the channel section did the following modification:
 sub , plane, counter, sig
  14, 1, 13, 1 !ADC ROC#1 Sl#15 Ch#14 Fast Raster X-sync
  15, 1, 14, 2 !ADC ROC#1 Sl#15 Ch#15 Fast Raster X-signal
  12, 1, 15, 3 !ADC ROC#1 Sl#15 Ch#12 Fast Raster Y-sync
  13, 1, 16, 4 !ADC ROC#1 Sl#15 Ch#13 Fast Raster Y-signal

  THcRasterRawHit class to helps with the decoding of the raster
     signals via THcHitList class.
  THcRasteredBeam class derives from THaApparatus to handle rastered beam.
  Modify Makefile and HallC_LinkDef.h to compile new classes

Added coding for read parameters from the hcana.param file.

In the hcana.param file added the four raster channels
graster_channels = "xsync xsig ysync ysig"

Created raster_test.C script to run the analyzer for raster code testing purpose. This was coppied from the hodotest.C

We have added a new parameter hcer_tot_pmts = 2 in hcana.param file.
It is equal to total number of PMTs in Cherenkov detector. With this
update, the THcCherenkov coarse process is complete. We have Raw adc,
pedestal subtracted adc, number of photo electrons and hits histograms
in the output root file for gas Cherenkov detector.

  Because git under Eclipse messes up soft links
  Use #include directive so desired file gets read

  general.param - include SOS parameter for most devices
  hcana.param - add sos versions of previous hardwired parameters
  db_run.dat - put in an angle and mometum for SOS
  output.def - include sos detectors in root tree
  hodtest.C - Add SOS spectrometer and some of its detectors

just for test purpose.

   {prefix}dc_fix_lr
        Historically, in the ENGINE, if a hit is used in multiple
        space points/stubs, the left/right assignment for that hit, which
        is later used in track fitting, is that assigned for the last stub
        encountered with that hit.  Properly, the left right assignment
        should be allowed to be different in different space points.  If
        this parameter is set to zero (e.g. in hcana.param), then the
        ENGINE behavior is used.  For new analyses, it should be set to one.
        (Which is the default)
   {prefix}dc_fix_propcorr
        When a hit gets put into a stub, the distance of the hit from the
        discriminator can then be estimated.  In the engine, a correction to
        the drift time (and thus drift distance) is applied.  However, if
        that hit ends up in another stub, the correction will get applied again,
        resulting in a over correction.  Setting this flag to 1 will give that
        hit a different corection for each stub that it is in.

These flags will default to the new "correct" way of handling hits if
the above parameters are not set in a parameter file.  Currently, both
flags are set to zero in hcana.param to replicate the ENGINE behavior.

To implement these changes, the propagation correction and L/R information
for each hit is saved in space point and track classes.  This information
is still saved in the hit class, but only used if in ENGINE compatibility
mode.

The THcDCTrack class now saves a list of space point pointers instead
of space point indices.

The AddSpacePoint method now also copies all the hit information into
the track object so that THcDC doesn't need to explicitely copy all
the hits.

The FindStub method, which fits a stub track to a space point is passed
the space point rather than a list of hits

  Name of coefficient file in hcana.param
  Some basic hms setting parameters added to test.database for run 50017
  Traceback code in THcHalCSpectrometer