Live time calculation was using the wrong scaler.

Add histograms for the difference between track
 projected to the chambers and scintillator position

Removed cut on beta histograms

goodstarttime is a flag. Not a time.
goodstarttime=1 means start_time was successfully
   calculated from focal plane.
goodstarttime=0 means its used a default value

Changed goodstartime histograms

Change ADC time window cut which actually
is now cut on the TDC -ADC time.

Add THaReactionPoint to calculate z-position along target

Change THaRun to THcRun

change THcHallCSpectrometer to by THcHallCSpectormeter object

Add scaler event type 129

* Update HMS TRIG DEF-files

* more chnges on TEST_STANDS TRIG DEF-file

* changes to be consistent with SHMS

* added some histograms

* Include new trigger types in the trigger apparatus

* Add new trigger types to scaler maps and database

* Include new trigger types in trigger maps

* Update scaler templates and def files

* Update maps to include new trigger types

* Set scaler event handlers to point at event 129 scaler reads

* Minor changes to pscaler cuts

* Fix title in production golden track histos

* Fix typos in trigger DEFs; add EPICS to production monitoring cfg; reorganize to be consistent with HMS

* Move gtr target variables own DEF-file

* Fix HMS hT1/hT2 slot/channel typo in histogram titles

Add more epics BPM quantities to raster_simple Def-files
    for HMS and SHMS

Add config and macro file for looking at epics bpm quantities

* fixed typos and changed files for PRODUCTION

* Update replay_production_coin.C

Update HMS and TRIG parameters for ADC reference time

Update TRIG histo def files.

* General formatting on pstackana.template. Template and cut file for hstackana_production.

* Edits to non-kpp template and cuts file.

* Incorporate event 129 into scaler reads

* Add configuration event handler

* Add pre-scale values and factors, also had HMS hodoscope scaler info

* Fix typo

* HMS TEST_STANDS ONLINE MONITORING

* HMS PRODUCTION ONLINE MONITORING

* changes to overlay and script files

* DC script changed to original

* more Script and DEF-file changes

* more changes

With the new HMS chambers, need to have separate HMS KPP
  replay script.

Also add gscalers.param to the HMS/GEN/general.param

1. cratemap added tdc in slot 2 .
2. Copied old cratemaps to KPP_spring_2017
3. DC map updated for 12 GeV chamber hdc.map and hdc_htrig.map
4. Add perl scripts under make_dc_maps for making map files
5. Updated hdc_histos.def

- The omission causes replay errors with the (unmodified) scripts
- This would seem to complete the changes started on the SHMS side
  in commit 1321191f

* fixed stash print

* as designed hms dc param

* new hms dc param to be used

* update hms dc plots and monitoring

* Add SHMS FADC reference time signal

* Modify report files and templates to better quantify the deadtimes

* Push initial changes for Steve

* Include failed state of HMS scalers replay script

* Include proper(?) method for obtaining event 129 scaler reads

* Ensure that trigger apparatus cut file has similar flow to stack and production to avoid confusion

* Remove reference time which serves as a reference time for the trigger apparatus

* Update maps corresponding to previous commit

* Ignore # files

* Update test stand cuts file to match production and stack

* Update test stand cuts file to match production and stack on HMS side

* Update cuts files to handle new event type stucture corresponding to mulitple triggers

* Make cuts only HMS specific

* Do the same for the SHMS and correct the template files

* Correct template files

* Add pedestal event because of historical reasons (needs to be fixed)

* Do the same for the SHMS

* Add SHMS FADC reference time signal

* Modify report files and templates to better quantify the deadtimes

* Push initial changes for Steve

* Include failed state of HMS scalers replay script

* Include proper(?) method for obtaining event 129 scaler reads

* Ensure that trigger apparatus cut file has similar flow to stack and production to avoid confusion

* Remove reference time which serves as a reference time for the trigger apparatus

* Update maps corresponding to previous commit

* Ignore # files

* Update test stand cuts file to match production and stack

* Update test stand cuts file to match production and stack on HMS side

* Add ignore stuff

* Include TI trigger inputs into scalers

* Add TI trigger inputs to param files

* Add TI trigger inputs to trigger maps

* Add HMS trigger apparatus variables to trigger test stand

* Remove raster from trigger apparatus map

Update HMS maps to include new TI trigger inputs

* Remove fast raster from trigger apparatus map

* Add TI trigger inputs to SHMS maps

* added HODO EDTM to Maps and Param filrs for HMS/SHMS; Added block T.hms.* in epics_short.def in order to produce HMS Hodo EDTM leaf variable; Added Hodo EDTM to scaler.map

* undo changes in HMS hodo naming schemes for scalers map

* First hack at setting up coincidence replay

* Add coincidence trigger map

* Update merge list for example purposes

* Add coincidence map

* Create coincidence replay script

* Create separate DBASE directory for SHMS

* Create separate DBASE for SHMS

Fix plethora of issues in HMS replay scripts

* Do not delete onlineDict.h

* Fix naming scheme and histo names to be consistant with the rest of the repo

* Same fix as previous commit but for HMS

* Modify production replay scripts to keep naming convention consistant with previous commits

* Apparently THaVhist cannot handle LaTeX alphabets

* Turn off tzero per wire param causing replay to crash and burn

* Uncomment event/trigger types.  Needs to be cleaned up later

* Remove deprecated detector directories

* Remove deprecated map files

* Exclude trigger histo with no real variable

* Include raster into stack map

* Uncomment lines which were causing a bajillion errors

Needs to be cleaned up at some point

* Remove deprecated parameter files

* Remove deprecated replay scripts

* Remove deprecated template file

* -added primary kin to HMS single arm production replay script
-Minor fix in shms production replay script

* Minor addition in replay_production_hms.C

* -change primary kine names in hms/shms replay scripts

* -added elec_KIN/ dir. for electron kinematics DEF-files for HMS/SHMS
-include new def files in mergelist and update production def file

* Re-structure the PARAM files for HMS and added raster variables to thms.param

* restructure hallc_replay DBASE for HMS param files; add hodo/cer kpp_spring_2017 calibration directories and parameter files

* restructure HMS detector maps directory; add hms run 303 to standard.database

* -added Raster to HMS trigger map
-minor fix in commented raster names
-minor fix in name for HMS to SHMS in an shms map file

* -Include only one spectrometer in 'g.evtyp' variable for HMS/SHMS report file cuts (for the moment ...)

* -added new 'PRODUCTION' directory for HMS where all def files with 'good' variables are included
-copied python script/list from SHMS 'PRODUCTION' directory to HMS.
(This script combines individual detector def files into one)

* -added STACK directory in HMS Def-files dir, which includes only stack histograms (excludes EPICS variables)

* -added TEST_STANDS directory in HMS Def-Files to include raw and good
detector histograms

* -excluded hms Aerogel from def files (for now . . .)

* -updated HMS templates for scalers, stack and production

* Re-structure the PARAM files for HMS and added raster variables to thms.param

* restructure hallc_replay DBASE for HMS param files; add hodo/cer kpp_spring_2017 calibration directories and parameter files

* restructure HMS detector maps directory; add hms run 303 to standard.database

* -added Raster to HMS trigger map
-minor fix in commented raster names
-minor fix in name for HMS to SHMS in an shms map file

* -Include only one spectrometer in 'g.evtyp' variable for HMS/SHMS report file cuts (for the moment ...)

* -added new 'PRODUCTION' directory for HMS where all def files with 'good' variables are included
-copied python script/list from SHMS 'PRODUCTION' directory to HMS.
(This script combines individual detector def files into one)

* -added STACK directory in HMS Def-files dir, which includes only stack histograms (excludes EPICS variables)

* -added TEST_STANDS directory in HMS Def-Files to include raw and good
detector histograms

* -excluded hms Aerogel from def files (for now . . .)

* -updated HMS templates for scalers, stack and production

* -Restructurization of replay scripts in HMS

* Minor fixes in shms replay scripts

* -moved replay scripts to new directories

* -Modified HMS Calorimeter Def-File Based on SHMS Calo Def File

* -Minor Fix to hms calo def file
-added h_fadc_debug.param to HMS Calorimeter general Parameters
-loaded fadc_debug param file in hms calorimeter test stand replay script

-added hms_cer f_adc_debug.param to hms_cer gen param
-added hms_cer f_adc_debug option to the hms_cer_replay script.

Added files
------------
DBASE/db_HSScalerevt.dat : scaler database for HMS
DBASE/db_PSScalerevt.dat : scaler database for SHMS
DBASE/make_scaler_db.py  : Python script to make HMS and SHMS
                           database files from xscaler scaler.map
SCRIPTS/HMS/replay_hms_scalers.C : script to replay HMS scalers only
SCRIPTS/SHMS/replay_shms_scalers.C : script to replay SHMS scalers only
DEF-files/HMS/EPICS/epics_short.def : List of EPICS variables to include in Tree
                                      used in scaler scripts as an example
onlineGUI/Config/hms_scaler.cfg  : configuration file to plot HMS scalers
onlineGUI/Macros/plot_hms_scaler.C  : Macro used by hms_scaler.cfg

onlineGUI/Config/shms_scaler.cfg  : configuration file to plot SHMS scalers
onlineGUI/Macros/plot_shms_scaler.C  : Macro used by shms_scaler.cfg

hcal.param
   1) gains for run 303,
   2) hcal_AdcNegThreshold=0.
   3) hcal_AdcPosThreshold=0.

pcal.param
   1) gains for run 464
   2)pcal_AdcNegThreshold=0.
   3)pcal_AdcPosThreshold=0.
   4)pcal_arr_AdcThreshold=0.0

Modified DEF-files for new names for the Cherenkov and Aerogel

Vardan calibrated the HMS (run 303) and SHMS (run 464) gain parameters
Add cuts on the ADC time
Updated the positions for SHMS preshower and fly's eye array
Have examples of histograms in hstackana_report.def and
  pstackana_report.def with cuts in hstackana_report_cuts.def and
  pstackana_report_cuts.def

In SHMS trig map SLOT=19 set chan 31 to be the reference time for the module
In HMS trig map SLOT2 seet chan 6 to be the reference time for the module
Add parameter t_hms_tdcoffset and t_hms_tdcchanperns to thms.param
Add parameter t_shms_tdcoffset and t_shms_tdcchanperns to tshms.param
Change hcosmicflag=0 for hhodo.param
As an example of trigger plots add histograms to hstackana_report.def and pstatckana_report.def