Live time calculation was using the wrong scaler.

* fixed typos and changed files for PRODUCTION

* Update replay_production_coin.C

* General formatting on pstackana.template. Template and cut file for hstackana_production.

* Edits to non-kpp template and cuts file.

* Add SHMS FADC reference time signal

* Modify report files and templates to better quantify the deadtimes

* Push initial changes for Steve

* Include failed state of HMS scalers replay script

* Include proper(?) method for obtaining event 129 scaler reads

* Ensure that trigger apparatus cut file has similar flow to stack and production to avoid confusion

* Remove reference time which serves as a reference time for the trigger apparatus

* Update maps corresponding to previous commit

* Ignore # files

* Update test stand cuts file to match production and stack

* Update test stand cuts file to match production and stack on HMS side

* Update cuts files to handle new event type stucture corresponding to mulitple triggers

* Make cuts only HMS specific

* Do the same for the SHMS and correct the template files

* Correct template files

* Add pedestal event because of historical reasons (needs to be fixed)

* Do the same for the SHMS

* First hack at setting up coincidence replay

* Add coincidence trigger map

* Update merge list for example purposes

* Add coincidence map

* Create coincidence replay script

* Fix naming scheme and histo names to be consistant with the rest of the repo

* Same fix as previous commit but for HMS

* Modify production replay scripts to keep naming convention consistant with previous commits

* Apparently THaVhist cannot handle LaTeX alphabets

* Turn off tzero per wire param causing replay to crash and burn

* Uncomment event/trigger types.  Needs to be cleaned up later

* Remove deprecated detector directories

* Remove deprecated map files

* Exclude trigger histo with no real variable

* Include raster into stack map

* Uncomment lines which were causing a bajillion errors

Needs to be cleaned up at some point

* Remove deprecated parameter files

* Remove deprecated replay scripts

* Remove deprecated template file

* Re-structure the PARAM files for HMS and added raster variables to thms.param

* restructure hallc_replay DBASE for HMS param files; add hodo/cer kpp_spring_2017 calibration directories and parameter files

* restructure HMS detector maps directory; add hms run 303 to standard.database

* -added Raster to HMS trigger map
-minor fix in commented raster names
-minor fix in name for HMS to SHMS in an shms map file

* -Include only one spectrometer in 'g.evtyp' variable for HMS/SHMS report file cuts (for the moment ...)

* -added new 'PRODUCTION' directory for HMS where all def files with 'good' variables are included
-copied python script/list from SHMS 'PRODUCTION' directory to HMS.
(This script combines individual detector def files into one)

* -added STACK directory in HMS Def-files dir, which includes only stack histograms (excludes EPICS variables)

* -added TEST_STANDS directory in HMS Def-Files to include raw and good
detector histograms

* -excluded hms Aerogel from def files (for now . . .)

* -updated HMS templates for scalers, stack and production

* Re-structure the PARAM files for HMS and added raster variables to thms.param

* restructure hallc_replay DBASE for HMS param files; add hodo/cer kpp_spring_2017 calibration directories and parameter files

* restructure HMS detector maps directory; add hms run 303 to standard.database

* -added Raster to HMS trigger map
-minor fix in commented raster names
-minor fix in name for HMS to SHMS in an shms map file

* -Include only one spectrometer in 'g.evtyp' variable for HMS/SHMS report file cuts (for the moment ...)

* -added new 'PRODUCTION' directory for HMS where all def files with 'good' variables are included
-copied python script/list from SHMS 'PRODUCTION' directory to HMS.
(This script combines individual detector def files into one)

* -added STACK directory in HMS Def-files dir, which includes only stack histograms (excludes EPICS variables)

* -added TEST_STANDS directory in HMS Def-Files to include raw and good
detector histograms

* -excluded hms Aerogel from def files (for now . . .)

* -updated HMS templates for scalers, stack and production

* -Restructurization of replay scripts in HMS

* Minor fixes in shms replay scripts

* -moved replay scripts to new directories

hcal.param
   1) gains for run 303,
   2) hcal_AdcNegThreshold=0.
   3) hcal_AdcPosThreshold=0.

pcal.param
   1) gains for run 464
   2)pcal_AdcNegThreshold=0.
   3)pcal_AdcPosThreshold=0.
   4)pcal_arr_AdcThreshold=0.0

Modified DEF-files for new names for the Cherenkov and Aerogel

Vardan calibrated the HMS (run 303) and SHMS (run 464) gain parameters
Add cuts on the ADC time
Updated the positions for SHMS preshower and fly's eye array
Have examples of histograms in hstackana_report.def and
  pstackana_report.def with cuts in hstackana_report_cuts.def and
  pstackana_report_cuts.def

Files for hodo calibration, updated HMS and SHMS hodo parameters  and new scripts for output reports
Add scripts for hms and shms which output report files
Updated cuts files to produce the test needs for the reports.
Created TEMPLATE directory with templates for the reports
Created CALIBRATION/hodo_calib directory for hodoscope calibration

Made replay_hms_report.C which expands on replay_hms.C
Need to create REPORT_OUTPUT directory