* Update scaler maps

* Update singles and coin report files

* Update hodo calib

* Add Dipankgar's monitoring scripts

* Update coincidence report template and replay scripts

* Fix BCM label typo

* Include Dipangkar ep coin work

* Add coincidence scaler infrastructure

* Move EDTM cuts to decode block

* General updates

* Update COIN monitoring

* Update COIN monitoring

* Update coin kinematics db

* Include coincidence event types

* Add event type summary

* Add single arm coincidence replays

* SHMS aerogel histos

* SHMS calorimeter histos

* Add DC histos

* Add HGCER histos

* Add SHMS hodoscope histos

* Add NGCER histos

* Clean up some straggling files

* Create new prodcution_ all replay that includes leaves and all histos

* Include PID production histos

* Clean up production_all work

* HMS calorimeter histos

* Add HMS production all infrastructure and PID histos

* Add HMS HGCER histos

* Add HMS drift chamber histos

* Add HMS hodo histos

* Add HMS trigger histos

* Add new production all script and infrastucture

* Update templates so that scalers and production are calculating the computer live time in the same manner

* Update replay scripts to include the configuration event handler and correct event types in the scaler replays

* Update various DEFfiles so that the report file quantities are consistent

Add THaReactionPoint to calculate z-position along target

Change THaRun to THcRun

change THcHallCSpectrometer to by THcHallCSpectormeter object

Add scaler event type 129

* Include new trigger types in the trigger apparatus

* Add new trigger types to scaler maps and database

* Include new trigger types in trigger maps

* Update scaler templates and def files

* Update maps to include new trigger types

* Set scaler event handlers to point at event 129 scaler reads

* Minor changes to pscaler cuts

Made SHMS stack map file for KPP

Made TRIG parameter file for KPP

Made replay_production_shms_kpp.C

* fixed typos and changed files for PRODUCTION

* Update replay_production_coin.C

* Minor changes to SHMS maps

* Minor changes to HMS maps

* Update merge list

* Update crate 3 map for coin

* Update coin maps

* Initial attempt at coincidence replay

* Update coin maps and replay script

- This closes a few-minute long race window where a file will be on tape
  (and moved out of raw/ to raw.copiedtotape/), but is not yet in
  cache/.  This can be hit by online-replay folks who fire off replay a
  immediately after ending a run.

* Incorporate event 129 into scaler reads

* Add configuration event handler

* Add pre-scale values and factors, also had HMS hodoscope scaler info

* Fix typo

* HMS TEST_STANDS ONLINE MONITORING

* HMS PRODUCTION ONLINE MONITORING

* changes to overlay and script files

* DC script changed to original

* more Script and DEF-file changes

* more changes

With the new HMS chambers, need to have separate HMS KPP
  replay script.

Also add gscalers.param to the HMS/GEN/general.param

1. cratemap added tdc in slot 2 .
2. Copied old cratemaps to KPP_spring_2017
3. DC map updated for 12 GeV chamber hdc.map and hdc_htrig.map
4. Add perl scripts under make_dc_maps for making map files
5. Updated hdc_histos.def

* Add optional title to overlay2.C macro

* SHMS test stand update

* Fix SHMS calorimeter onlineGUI config

Needs https://github.com/JeffersonLab/hcana_gem installed and built
  in ../hcana_gem and thishcana_gem.sh or thishcana_gem.csh to have been
  sourced.

* Add SHMS FADC reference time signal

* Modify report files and templates to better quantify the deadtimes

* Push initial changes for Steve

* Include failed state of HMS scalers replay script

* Include proper(?) method for obtaining event 129 scaler reads

* Ensure that trigger apparatus cut file has similar flow to stack and production to avoid confusion

* Remove reference time which serves as a reference time for the trigger apparatus

* Update maps corresponding to previous commit

* Ignore # files

* Update test stand cuts file to match production and stack

* Update test stand cuts file to match production and stack on HMS side

* Add vim lint to .gitignore

* Update replay scripts to search in a list of paths

- NOTE: This requires the podd submodule be updated to include
  modifcations to the THaRun constructor that can search a pathList.

- The default './raw' and './cache' pathnames that are searched here
  should generally be symlinks to the relevant local path on the Hall C
  cluster, and the /cache/mss/hallc/.../raw/ path, respectively. For
  example:
    cd hallc_replay
    ln -s /net/cdaq/cdaql3data/coda/data/raw raw
    ln -s /cache/mss/hallc/spring17/raw      cache

- FWIW: The batch filtering of the replay scripts was done with
  this perl script:
    cd SCRIPTS/
    find . -name '*.C' -exec ./filter.pl {} \;
  --- filter.pl ---
  #!/usr/bin/perl

  use File::Slurp;

  my $file = read_file($ARGV[0]);

  $file =~ s/\Qchar RunFileName[100];\E\W*\Qsprintf(RunFileName, RunFileNamePattern, RunNumber);\E\W*\QTHaRun* run = new THaRun(RunFileName);\E/THaRun* run = new THaRun( pathList, Form(RunFileNamePattern, RunNumber) );/s;

  $file =~ s/\Qconst char* RunFileNamePattern = "\E.*?\/(.*?\.dat)";/const char* RunFileNamePattern = "$1";\n  vector<TString> pathList;\n    pathList.push_back(".");\n    pathList.push_back(".\/raw");\n    pathList.push_back(".\/cache");\n/s;

  write_file("$ARGV[0]", $file);
  ---

* Include consolidated SHMS TI trigger inputs into HMS trigger maps

* Include SHMS TI trigger inputs into HMS test stand maps

* Include consolidated HMS TI trigger inputs into SHMS trigger maps

* Include HMS TI trigger inputs into SHMS test stand maps

* Point HMS DC test stand to 6 GeV chamber histos

* Update scaler map and database to include mixed HMS and SHMS triggers

* First hack at setting up coincidence replay

* Add coincidence trigger map

* Update merge list for example purposes

* Add coincidence map

* Create coincidence replay script

* Create separate DBASE directory for SHMS

* Create separate DBASE for SHMS

Fix plethora of issues in HMS replay scripts

* Do not delete onlineDict.h