Merge remote-tracking branch 'upstream/master'

Fixed two bugs in merge_maps.py.

Pooser organization work

Split up the parameter files of the SHMS DCs to match what was done with the HMS DCs.

Pooser shms dc work

Modified a few things and cleaned up shop.

I still need to add reference times to both HMS and SHMS chamber wiremaps.

Bugfix of MAPS/merge_maps.py.

Some slots were not merged and some had wrong crate number.
To fix this I had to do basically a complete rewrite of the script.
However, now it looks much nicer :)

Update hallc_replay

Pooser fix replay for new data

Fixes for ROOT6 and C++11.

- Changed `break` in the runnumber check to `return`. `hcana` was failing in a spectacular way because of that.
- Changed `RunFileNamePattern` to `const char*` to avoid a warning for C++11.

Initial online GUI directory

Updated for trigger detector.

Changed trigger map to correspond with detector design.
Added parameter file.

Pooser map work

Add HMS trigger information to README

Modify crate map generator to include a more robust user interface

Wrote README to better illustrate the detector locations in the crates

Add shell script to make single crate map for select crates

Python script for merging map files.

This script merges map files based on input list into a single map file.
It currently ingores the comment lines.
It also ignores next keywords: MASK, NSUBADD, BSUB. They are not currently
used.

Added setup.sh .

Rearrange db_run.dat and db_cratemap.dat

Move db_run.dat to DBASE
Move db_cratemap.dat to MAPS
add file setup.csh that setenv DB_DIR DBASE
modify SCRIPTS/replay_hms.C to have line
analyzer->SetCrateMapFileName("MAPS/db_cratemap.dat");

Corrected hodomap + cleanup of demo replay script

Corrected wrong signal assignment for the TDC channels:
  4->3  3->2