Dp cut & Cherenkov Updates (#196)

* May 26, 2017 -- Long overdue push, some old Calibration Scripts but also the presently working analysis and Calibration scripts in Final Scripts directory.

* Updated Calibration with pulseAmp script.

* root file

* added Rootfiles

* Rewrote pulseAmp analysis, works much better now.
Included Degtiarenko's code to evaluate as a better alternative.
Started the write up for the actual calibration process

* Updated Analysis scripts, started deciphering Fortran code.

* test

* TEST

* test

* bla

* blah

* boring git stuff

* git stuff

* Made the master branch much more organized/presentable

* Finializing directory. Modified how calibration appears/output the calibration constants

* Updated the analysis and visualization scripts for NGC.

* Version of Calibration suitable for the Summer presentation.

* Removed debugging line

* Updating repository with changes made at software workshop

* Added changes to PARAM & DBASE files to take appropriate HGC calibration constants for each run.

* Changed replay output to something more sensible

* Added new Analysis scripts to master

* Removing bloat from merge with branch Ryan

* Removing redundant files from master

* Added properly named, properly formatted calibration scripts to master

* Removed bloat with the README file

* Removed more bloat in data_files

* Updated calibration file

* Updated calibration script to include the NGC as well. Added calibration parameters to PARAM & DBASE in an identical method as the HGC.

* Updated calibraion scripts

* Removed tracking of .gitignore

* Added .gitignore...can't change branches otherwise

* Updated calibration script to include Eric's recommendation of cuting on TracksFired leaf.

* Updated investigation of the integrals of first few photoelectrons

* Updated display to show expected integral based on Poisson statistics

* Updated Calorimeter PARAM CALIB file after discussion with Varden

* Merged efficiencies from development branch to master

* Updated efficiency script to only display info if requested, and will now output the cuts on beta and timing

* Cleaned up efficiencies.C, now in more or less a final stage.
calibration still needs a little cleaning up, especially concerning the poisson/Guassian after processing which yielded little information.

* Updated calibration, much cleaner and sensible

* Added particle ID for tracksfired calibration strategy

* Changed the calibrated histograms to have identical limits/bins. Required merging some bins together from original data...should be okay.

* Updated files to include cut on delta p on all 3 Cherenkovs

* Cleaned up tracksfired calibration strategy

* Added quick README on instructions to run script

* Finialized the quick README.md

* Update README.md

* Update .gitignore

* Deleted unnecessary DBASE files

* Cleaned up Pull request

* Changed Cal Calib run488 file to remove old calib constants