Update flag_handler for 'netcdf-fortran'. (#14789)

* Update flag_handler for 'netcdf-fortran'. * Refactoring. * Enable old versions of netcdf-fortran for NAG. * Disable parallel 'make check' for versions before 4.5.0. * Fix shared libraries built with NAG instead of conflicting it. * Add 'skosukhin' as a maintainer of 'netcdf-fortran'.

Update flag_handler for 'netcdf-fortran'. (#14789)
e3b357ad · Sergey Kosukhin · GitHub · aae59f48 · e3b357ad · e3b357ad
Unverified Commit e3b357ad authored 5 years ago by Sergey Kosukhin Committed by GitHub 5 years ago
--- a/var/spack/repos/builtin/packages/netcdf-fortran/excessive_linking.patch
+++ b/var/spack/repos/builtin/packages/netcdf-fortran/excessive_linking.patch
+--- a/config.h.in
+++ b/config.h.in
+@@ -52,9 +52,6 @@
+ /* Define to 1 if you have the <inttypes.h> header file. */
+ #undef HAVE_INTTYPES_H
+ 
+-/* Define to 1 if you have the `curl' library (-lcurl). */
+-#undef HAVE_LIBCURL
+-
+ /* Define to 1 if you have the `m' library (-lm). */
+ #undef HAVE_LIBM
+ 
+--- a/configure
+++ b/configure
+@@ -22122,6 +22122,14 @@ $as_echo "$as_me: checking types, headers, and functions" >&6;}
+ 
+ # We must check for all these, because they may be used by the netCDF
+ # C library.
+# Removing the checks for some of the libraries because of issues
+# observed when they are detected, are not needed, and an attempt to
+# link against is made anyways.
+# See https://github.com/Unidata/netcdf-fortran/issues/164
+#
+# Specifying LDFLAGS="$(nc-config --libs [--static])" should
+# let downstream developers link more reliably against libnetcdf.
+
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for floor in -lm" >&5
+ $as_echo_n "checking for floor in -lm... " >&6; }
+ if ${ac_cv_lib_m_floor+:} false; then :
+@@ -22167,163 +22175,6 @@ _ACEOF
+ 
+ fi
+ 
+-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for curl_easy_setopt in -lcurl" >&5
+-$as_echo_n "checking for curl_easy_setopt in -lcurl... " >&6; }
+-if ${ac_cv_lib_curl_curl_easy_setopt+:} false; then :
+-  $as_echo_n "(cached) " >&6
+-else
+-  ac_check_lib_save_LIBS=$LIBS
+-LIBS="-lcurl  $LIBS"
+-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+-/* end confdefs.h.  */
+-
+-/* Override any GCC internal prototype to avoid an error.
+-   Use char because int might match the return type of a GCC
+-   builtin and then its argument prototype would still apply.  */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-char curl_easy_setopt ();
+-int
+-main ()
+-{
+-return curl_easy_setopt ();
+-  ;
+-  return 0;
+-}
+-_ACEOF
+-if ac_fn_c_try_link "$LINENO"; then :
+-  ac_cv_lib_curl_curl_easy_setopt=yes
+-else
+-  ac_cv_lib_curl_curl_easy_setopt=no
+-fi
+-rm -f core conftest.err conftest.$ac_objext \
+-    conftest$ac_exeext conftest.$ac_ext
+-LIBS=$ac_check_lib_save_LIBS
+-fi
+-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_curl_curl_easy_setopt" >&5
+-$as_echo "$ac_cv_lib_curl_curl_easy_setopt" >&6; }
+-if test "x$ac_cv_lib_curl_curl_easy_setopt" = xyes; then :
+-  cat >>confdefs.h <<_ACEOF
+-#define HAVE_LIBCURL 1
+-_ACEOF
+-
+-  LIBS="-lcurl $LIBS"
+-
+-fi
+-
+-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing deflate" >&5
+-$as_echo_n "checking for library containing deflate... " >&6; }
+-if ${ac_cv_search_deflate+:} false; then :
+-  $as_echo_n "(cached) " >&6
+-else
+-  ac_func_search_save_LIBS=$LIBS
+-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+-/* end confdefs.h.  */
+-
+-/* Override any GCC internal prototype to avoid an error.
+-   Use char because int might match the return type of a GCC
+-   builtin and then its argument prototype would still apply.  */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-char deflate ();
+-int
+-main ()
+-{
+-return deflate ();
+-  ;
+-  return 0;
+-}
+-_ACEOF
+-for ac_lib in '' zlibwapi zlibstat zlib zlib1 z; do
+-  if test -z "$ac_lib"; then
+-    ac_res="none required"
+-  else
+-    ac_res=-l$ac_lib
+-    LIBS="-l$ac_lib  $ac_func_search_save_LIBS"
+-  fi
+-  if ac_fn_c_try_link "$LINENO"; then :
+-  ac_cv_search_deflate=$ac_res
+-fi
+-rm -f core conftest.err conftest.$ac_objext \
+-    conftest$ac_exeext
+-  if ${ac_cv_search_deflate+:} false; then :
+-  break
+-fi
+-done
+-if ${ac_cv_search_deflate+:} false; then :
+-
+-else
+-  ac_cv_search_deflate=no
+-fi
+-rm conftest.$ac_ext
+-LIBS=$ac_func_search_save_LIBS
+-fi
+-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_deflate" >&5
+-$as_echo "$ac_cv_search_deflate" >&6; }
+-ac_res=$ac_cv_search_deflate
+-if test "$ac_res" != no; then :
+-  test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+-
+-fi
+-
+-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing SZ_Compress" >&5
+-$as_echo_n "checking for library containing SZ_Compress... " >&6; }
+-if ${ac_cv_search_SZ_Compress+:} false; then :
+-  $as_echo_n "(cached) " >&6
+-else
+-  ac_func_search_save_LIBS=$LIBS
+-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+-/* end confdefs.h.  */
+-
+-/* Override any GCC internal prototype to avoid an error.
+-   Use char because int might match the return type of a GCC
+-   builtin and then its argument prototype would still apply.  */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-char SZ_Compress ();
+-int
+-main ()
+-{
+-return SZ_Compress ();
+-  ;
+-  return 0;
+-}
+-_ACEOF
+-for ac_lib in '' szip sz; do
+-  if test -z "$ac_lib"; then
+-    ac_res="none required"
+-  else
+-    ac_res=-l$ac_lib
+-    LIBS="-l$ac_lib  $ac_func_search_save_LIBS"
+-  fi
+-  if ac_fn_c_try_link "$LINENO"; then :
+-  ac_cv_search_SZ_Compress=$ac_res
+-fi
+-rm -f core conftest.err conftest.$ac_objext \
+-    conftest$ac_exeext
+-  if ${ac_cv_search_SZ_Compress+:} false; then :
+-  break
+-fi
+-done
+-if ${ac_cv_search_SZ_Compress+:} false; then :
+-
+-else
+-  ac_cv_search_SZ_Compress=no
+-fi
+-rm conftest.$ac_ext
+-LIBS=$ac_func_search_save_LIBS
+-fi
+-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_SZ_Compress" >&5
+-$as_echo "$ac_cv_search_SZ_Compress" >&6; }
+-ac_res=$ac_cv_search_SZ_Compress
+-if test "$ac_res" != no; then :
+-  test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+-
+-fi
+-
+ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing dlopen" >&5
+ $as_echo_n "checking for library containing dlopen... " >&6; }
+ if ${ac_cv_search_dlopen+:} false; then :
+@@ -22380,118 +22231,6 @@ if test "$ac_res" != no; then :
+ 
+ fi
+ 
+-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing H5Fflush" >&5
+-$as_echo_n "checking for library containing H5Fflush... " >&6; }
+-if ${ac_cv_search_H5Fflush+:} false; then :
+-  $as_echo_n "(cached) " >&6
+-else
+-  ac_func_search_save_LIBS=$LIBS
+-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+-/* end confdefs.h.  */
+-
+-/* Override any GCC internal prototype to avoid an error.
+-   Use char because int might match the return type of a GCC
+-   builtin and then its argument prototype would still apply.  */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-char H5Fflush ();
+-int
+-main ()
+-{
+-return H5Fflush ();
+-  ;
+-  return 0;
+-}
+-_ACEOF
+-for ac_lib in '' hdf5dll hdf5; do
+-  if test -z "$ac_lib"; then
+-    ac_res="none required"
+-  else
+-    ac_res=-l$ac_lib
+-    LIBS="-l$ac_lib  $ac_func_search_save_LIBS"
+-  fi
+-  if ac_fn_c_try_link "$LINENO"; then :
+-  ac_cv_search_H5Fflush=$ac_res
+-fi
+-rm -f core conftest.err conftest.$ac_objext \
+-    conftest$ac_exeext
+-  if ${ac_cv_search_H5Fflush+:} false; then :
+-  break
+-fi
+-done
+-if ${ac_cv_search_H5Fflush+:} false; then :
+-
+-else
+-  ac_cv_search_H5Fflush=no
+-fi
+-rm conftest.$ac_ext
+-LIBS=$ac_func_search_save_LIBS
+-fi
+-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_H5Fflush" >&5
+-$as_echo "$ac_cv_search_H5Fflush" >&6; }
+-ac_res=$ac_cv_search_H5Fflush
+-if test "$ac_res" != no; then :
+-  test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+-
+-fi
+-
+-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing H5DSis_scale" >&5
+-$as_echo_n "checking for library containing H5DSis_scale... " >&6; }
+-if ${ac_cv_search_H5DSis_scale+:} false; then :
+-  $as_echo_n "(cached) " >&6
+-else
+-  ac_func_search_save_LIBS=$LIBS
+-cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+-/* end confdefs.h.  */
+-
+-/* Override any GCC internal prototype to avoid an error.
+-   Use char because int might match the return type of a GCC
+-   builtin and then its argument prototype would still apply.  */
+-#ifdef __cplusplus
+-extern "C"
+-#endif
+-char H5DSis_scale ();
+-int
+-main ()
+-{
+-return H5DSis_scale ();
+-  ;
+-  return 0;
+-}
+-_ACEOF
+-for ac_lib in '' hdf5_hldll hdf5_hl; do
+-  if test -z "$ac_lib"; then
+-    ac_res="none required"
+-  else
+-    ac_res=-l$ac_lib
+-    LIBS="-l$ac_lib  $ac_func_search_save_LIBS"
+-  fi
+-  if ac_fn_c_try_link "$LINENO"; then :
+-  ac_cv_search_H5DSis_scale=$ac_res
+-fi
+-rm -f core conftest.err conftest.$ac_objext \
+-    conftest$ac_exeext
+-  if ${ac_cv_search_H5DSis_scale+:} false; then :
+-  break
+-fi
+-done
+-if ${ac_cv_search_H5DSis_scale+:} false; then :
+-
+-else
+-  ac_cv_search_H5DSis_scale=no
+-fi
+-rm conftest.$ac_ext
+-LIBS=$ac_func_search_save_LIBS
+-fi
+-{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_H5DSis_scale" >&5
+-$as_echo "$ac_cv_search_H5DSis_scale" >&6; }
+-ac_res=$ac_cv_search_H5DSis_scale
+-if test "$ac_res" != no; then :
+-  test "$ac_res" = "none required" || LIBS="$ac_res $LIBS"
+-
+-fi
+-
+ 
+ # Find the netCDF header and library.
+ for ac_header in netcdf.h
--- a/var/spack/repos/builtin/packages/netcdf-fortran/logging.patch
+++ b/var/spack/repos/builtin/packages/netcdf-fortran/logging.patch
+--- a/fortran/nf_logging.F90
+++ b/fortran/nf_logging.F90
+@@ -1,3 +1,10 @@
+! This file is compiled only if logging is enabled. However, the macro LOGGING
+! is never defined. For most of the compilers this simply leads to an empty
+! object: they do not complain when a source file is empty. This is not the
+! case for NAG: the compiler fails the compilation of empty sources. To fix
+! this problem, we define the macro here.
+#define LOGGING
+
+ #ifdef LOGGING
+ ! Function to turn on logging
+ !-------------------------------- nf_set_log_level ----------------------------
--- a/var/spack/repos/builtin/packages/netcdf-fortran/nag.patch
+++ b/var/spack/repos/builtin/packages/netcdf-fortran/nag.patch
-diff --git a/configure b/configure
-index 06ac8b0..d518a1a 100755
--- a/configure
-+++ b/configure
-@@ -10657,6 +10657,8 @@ _LT_EOF
- 	lf95*)				# Lahey Fortran 8.1
- 	  whole_archive_flag_spec=
- 	  tmp_sharedflag='--shared' ;;
-+	nagfor*)
-+	  tmp_sharedflag='-Wl,-shared' ;;
- 	xl[cC]* | bgxl[cC]* | mpixl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below)
- 	  tmp_sharedflag='-qmkshrobj'
- 	  tmp_addflag= ;;
-@@ -14252,6 +14254,8 @@ _LT_EOF
- 	lf95*)				# Lahey Fortran 8.1
- 	  whole_archive_flag_spec_F77=
- 	  tmp_sharedflag='--shared' ;;
-+	nagfor*)
-+	  tmp_sharedflag='-Wl,-shared' ;;
- 	xl[cC]* | bgxl[cC]* | mpixl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below)
- 	  tmp_sharedflag='-qmkshrobj'
- 	  tmp_addflag= ;;
-@@ -17142,6 +17146,8 @@ _LT_EOF
- 	lf95*)				# Lahey Fortran 8.1
- 	  whole_archive_flag_spec_FC=
- 	  tmp_sharedflag='--shared' ;;
-+	nagfor*)
-+	  tmp_sharedflag='-Wl,-shared' ;;
- 	xl[cC]* | bgxl[cC]* | mpixl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below)
- 	  tmp_sharedflag='-qmkshrobj'
- 	  tmp_addflag= ;;
--- a/var/spack/repos/builtin/packages/netcdf-fortran/nag_libtool_2.4.2.patch
+++ b/var/spack/repos/builtin/packages/netcdf-fortran/nag_libtool_2.4.2.patch
+--- a/configure
+++ b/configure
+@@ -9584,6 +9584,10 @@ for cc_temp in $compiler""; do
+   esac
+ done
+ cc_basename=`$ECHO "$cc_temp" | $SED "s%.*/%%; s%^$host_alias-%%"`
+case $cc_basename in
+  nagfor*) ;;
+  *) $cc_temp -V 2>&1 | $GREP '^NAG Fortran Compiler Release' >/dev/null 2>&1 && cc_basename='nagfor-wrapper' ;;
+esac
+ 
+ 
+ # Only perform the check for file, if the check method requires it
+@@ -10657,6 +10661,10 @@ _LT_EOF
+ 	lf95*)				# Lahey Fortran 8.1
+ 	  whole_archive_flag_spec=
+ 	  tmp_sharedflag='--shared' ;;
+	nagfor*)
+	  whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test  -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
+	  compiler_needs_object=yes
+	  tmp_sharedflag='-Wl,-shared' ;;
+ 	xl[cC]* | bgxl[cC]* | mpixl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below)
+ 	  tmp_sharedflag='-qmkshrobj'
+ 	  tmp_addflag= ;;
+@@ -13415,6 +13423,10 @@ $RM -r conftest*
+   esac
+ done
+ cc_basename=`$ECHO "$cc_temp" | $SED "s%.*/%%; s%^$host_alias-%%"`
+case $cc_basename in
+  nagfor*) ;;
+  *) $cc_temp -V 2>&1 | $GREP '^NAG Fortran Compiler Release' >/dev/null 2>&1 && cc_basename='nagfor-wrapper' ;;
+esac
+ 
+   GCC=$G77
+   if test -n "$compiler"; then
+@@ -14252,6 +14264,10 @@ _LT_EOF
+ 	lf95*)				# Lahey Fortran 8.1
+ 	  whole_archive_flag_spec_F77=
+ 	  tmp_sharedflag='--shared' ;;
+	nagfor*)
+	  whole_archive_flag_spec_F77='${wl}--whole-archive`for conv in $convenience\"\"; do test  -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
+	  compiler_needs_object_F77=yes
+	  tmp_sharedflag='-Wl,-shared' ;;
+ 	xl[cC]* | bgxl[cC]* | mpixl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below)
+ 	  tmp_sharedflag='-qmkshrobj'
+ 	  tmp_addflag= ;;
+@@ -16142,6 +16158,10 @@ $RM -r conftest*
+   esac
+ done
+ cc_basename=`$ECHO "$cc_temp" | $SED "s%.*/%%; s%^$host_alias-%%"`
+case $cc_basename in
+  nagfor*) ;;
+  *) $cc_temp -V 2>&1 | $GREP '^NAG Fortran Compiler Release' >/dev/null 2>&1 && cc_basename='nagfor-wrapper' ;;
+esac
+ 
+ 
+   if test -n "$compiler"; then
+@@ -17142,6 +17162,10 @@ _LT_EOF
+ 	lf95*)				# Lahey Fortran 8.1
+ 	  whole_archive_flag_spec_FC=
+ 	  tmp_sharedflag='--shared' ;;
+	nagfor*)
+	  whole_archive_flag_spec_FC='${wl}--whole-archive`for conv in $convenience\"\"; do test  -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` ${wl}--no-whole-archive'
+	  compiler_needs_object_FC=yes
+	  tmp_sharedflag='-Wl,-shared' ;;
+ 	xl[cC]* | bgxl[cC]* | mpixl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below)
+ 	  tmp_sharedflag='-qmkshrobj'
+ 	  tmp_addflag= ;;
+--- a/ltmain.sh
+++ b/ltmain.sh
+@@ -180,6 +180,24 @@ func_basename ()
+     func_basename_result=`$ECHO "${1}" | $SED "$basename"`
+ } # func_basename may be replaced by extended shell implementation
+ 
+# Calculate cc_basename.  Skip known compiler wrappers and cross-prefix.
+func_cc_basename ()
+{
+    for cc_temp in $*""; do
+      case $cc_temp in
+        compile | *[\\/]compile | ccache | *[\\/]ccache ) ;;
+        distcc | *[\\/]distcc | purify | *[\\/]purify ) ;;
+        \-*) ;;
+        *) break;;
+      esac
+    done
+    func_cc_basename_result=`$ECHO "$cc_temp" | $SED "s%.*/%%; s%^$host_alias-%%"`
+    case $func_cc_basename_result in
+      nagfor*) ;;
+      *) $cc_temp -V 2>&1 | $GREP '^NAG Fortran Compiler Release' >/dev/null 2>&1 && func_cc_basename_result='nagfor-wrapper' ;;
+    esac
+}
+
+ 
+ # func_dirname_and_basename file append nondir_replacement
+ # perform func_basename and func_dirname in a single function
+@@ -6422,6 +6440,13 @@ func_mode_link ()
+ 	# Convert "-framework foo" to "foo.ltframework"
+ 	if test -n "$inherited_linker_flags"; then
+ 	  tmp_inherited_linker_flags=`$ECHO "$inherited_linker_flags" | $SED 's/-framework \([^ $]*\)/\1.ltframework/g'`
+
+	  # Additionally convert " -pthread" to " -Wl,-pthread" for nagfor
+	  func_cc_basename $CC
+	  case $func_cc_basename_result in
+	    nagfor*) tmp_inherited_linker_flags=`$ECHO "$tmp_inherited_linker_flags" | $SED 's/ -pthread/ -Wl,-pthread/g'` ;;
+	  esac
+
+ 	  for tmp_inherited_linker_flag in $tmp_inherited_linker_flags; do
+ 	    case " $new_inherited_linker_flags " in
+ 	      *" $tmp_inherited_linker_flag "*) ;;
+@@ -8007,6 +8032,14 @@ EOF
+ 	  ;;
+       esac
+ 
+      # Time to revert the changes made for nagfor.
+
+      func_cc_basename $CC
+      case $func_cc_basename_result in
+        nagfor*)
+          new_inherited_linker_flags=`$ECHO " $new_inherited_linker_flags" | $SED 's% -Wl,-pthread% -pthread%g'` ;;
+      esac
+
+       # move library search paths that coincide with paths to not yet
+       # installed libraries to the beginning of the library search list
+       new_libs=
--- a/var/spack/repos/builtin/packages/netcdf-fortran/nag_libtool_2.4.6.patch
+++ b/var/spack/repos/builtin/packages/netcdf-fortran/nag_libtool_2.4.6.patch
+--- a/configure
+++ b/configure
+@@ -9034,6 +9034,12 @@ func_cc_basename ()
+       esac
+     done
+     func_cc_basename_result=`$ECHO "$cc_temp" | $SED "s%.*/%%; s%^$host_alias-%%"`
+
+    # Set result to 'nagfor-wrapper' when NAG compiler is called via a wrapper (e.g. mpif90).
+    case $func_cc_basename_result in
+      nagfor*) ;;
+      *) $cc_temp -V 2>&1 | $GREP '^NAG Fortran Compiler Release' >/dev/null 2>&1 && func_cc_basename_result='nagfor-wrapper' ;;
+    esac
+ }
+ 
+ # Check whether --enable-libtool-lock was given.
+@@ -11811,6 +11817,8 @@ _LT_EOF
+ 	  whole_archive_flag_spec=
+ 	  tmp_sharedflag='--shared' ;;
+         nagfor*)                        # NAGFOR 5.3
+          whole_archive_flag_spec='$wl--whole-archive`for conv in $convenience\"\"; do test  -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` $wl--no-whole-archive'
+          compiler_needs_object=yes
+           tmp_sharedflag='-Wl,-shared' ;;
+ 	xl[cC]* | bgxl[cC]* | mpixl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below)
+ 	  tmp_sharedflag='-qmkshrobj'
+@@ -15663,6 +15671,8 @@ _LT_EOF
+ 	  whole_archive_flag_spec_F77=
+ 	  tmp_sharedflag='--shared' ;;
+         nagfor*)                        # NAGFOR 5.3
+          whole_archive_flag_spec_F77='$wl--whole-archive`for conv in $convenience\"\"; do test  -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` $wl--no-whole-archive'
+          compiler_needs_object_F77=yes
+           tmp_sharedflag='-Wl,-shared' ;;
+ 	xl[cC]* | bgxl[cC]* | mpixl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below)
+ 	  tmp_sharedflag='-qmkshrobj'
+@@ -18788,6 +18798,8 @@ _LT_EOF
+ 	  whole_archive_flag_spec_FC=
+ 	  tmp_sharedflag='--shared' ;;
+         nagfor*)                        # NAGFOR 5.3
+          whole_archive_flag_spec_FC='$wl--whole-archive`for conv in $convenience\"\"; do test  -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; func_echo_all \"$new_convenience\"` $wl--no-whole-archive'
+          compiler_needs_object_FC=yes
+           tmp_sharedflag='-Wl,-shared' ;;
+ 	xl[cC]* | bgxl[cC]* | mpixl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below)
+ 	  tmp_sharedflag='-qmkshrobj'
+@@ -26086,6 +26098,12 @@ func_cc_basename ()
+       esac
+     done
+     func_cc_basename_result=`$ECHO "$cc_temp" | $SED "s%.*/%%; s%^$host_alias-%%"`
+
+    # Set result to 'nagfor-wrapper' when NAG compiler is called via a wrapper (e.g. mpif90).
+    case $func_cc_basename_result in
+      nagfor*) ;;
+      *) $cc_temp -V 2>&1 | $GREP '^NAG Fortran Compiler Release' >/dev/null 2>&1 && func_cc_basename_result='nagfor-wrapper' ;;
+    esac
+ }
+ 
+ 
+--- a/ltmain.sh
+++ b/ltmain.sh
+@@ -7868,6 +7868,13 @@ func_mode_link ()
+ 	# Convert "-framework foo" to "foo.ltframework"
+ 	if test -n "$inherited_linker_flags"; then
+ 	  tmp_inherited_linker_flags=`$ECHO "$inherited_linker_flags" | $SED 's/-framework \([^ $]*\)/\1.ltframework/g'`
+
+	  # Additionally convert " -pthread" to " -Wl,-pthread" for nagfor
+	  func_cc_basename $CC
+	  case $func_cc_basename_result in
+	    nagfor*) tmp_inherited_linker_flags=`$ECHO "$tmp_inherited_linker_flags" | $SED 's/ -pthread/ -Wl,-pthread/g'` ;;
+	  esac
+
+ 	  for tmp_inherited_linker_flag in $tmp_inherited_linker_flags; do
+ 	    case " $new_inherited_linker_flags " in
+ 	      *" $tmp_inherited_linker_flag "*) ;;
+@@ -8890,7 +8897,8 @@ func_mode_link ()
+ 	  xlcverstring="$wl-compatibility_version $wl$minor_current $wl-current_version $wl$minor_current.$revision"
+ 	  verstring="-compatibility_version $minor_current -current_version $minor_current.$revision"
+           # On Darwin other compilers
+-          case $CC in
+          func_cc_basename $CC
+          case $func_cc_basename_result in
+               nagfor*)
+                   verstring="$wl-compatibility_version $wl$minor_current $wl-current_version $wl$minor_current.$revision"
+                   ;;
+@@ -9502,6 +9510,14 @@ EOF
+ 	  ;;
+       esac
+ 
+      # Time to revert the changes made for nagfor.
+
+      func_cc_basename $CC
+      case $func_cc_basename_result in
+        nagfor*)
+          new_inherited_linker_flags=`$ECHO " $new_inherited_linker_flags" | $SED 's% -Wl,-pthread% -pthread%g'` ;;
+      esac
+
+       # move library search paths that coincide with paths to not yet
+       # installed libraries to the beginning of the library search list
+       new_libs=
--- a/var/spack/repos/builtin/packages/netcdf-fortran/nag_testing.patch
+++ b/var/spack/repos/builtin/packages/netcdf-fortran/nag_testing.patch
+--- a/nf_test/ftst_rengrps.F
+++ b/nf_test/ftst_rengrps.F
+@@ -11,7 +11,7 @@ C      use typeSizes
+ C      use netcdf
+ C      use netcdf4_f03
+       implicit none
+-     include "netcdf.inc"
+      include "netcdf.inc"
+       
+ C This is the name of the data file we will create.
+       character (len = *), parameter :: FILE_NAME = "ftst_rengrps.nc"
--- a/var/spack/repos/builtin/packages/netcdf-fortran/package.py
+++ b/var/spack/repos/builtin/packages/netcdf-fortran/package.py
@@ -13,7 +13,9 @@ class NetcdfFortran(AutotoolsPackage):
    distribution."""

    homepage = "https://www.unidata.ucar.edu/software/netcdf"
-    url      = "https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-fortran-4.5.2.tar.gz"
+    url      = "https://www.gfd-dennou.org/arch/netcdf/unidata-mirror/netcdf-fortran-4.5.2.tar.gz"
+
+    maintainers = ['skosukhin']

    version('4.5.2', sha256='b959937d7d9045184e9d2040a915d94a7f4d0185f4a9dceb8f08c94b0c3304aa')
    version('4.4.5', sha256='2467536ce29daea348c736476aa8e684c075d2f6cab12f3361885cb6905717b8')
@@ -24,6 +26,7 @@ class NetcdfFortran(AutotoolsPackage):
            description='Enable parallel I/O for netcdf-4')
    variant('pic', default=True,
            description='Produce position-independent code (for shared libs)')
+    variant('shared', default=True, description='Enable shared library')

    # We need to build with MPI wrappers if parallel I/O features is enabled:
    # https://www.unidata.ucar.edu/software/netcdf/docs/building_netcdf_fortran.html
@@ -34,42 +37,79 @@ class NetcdfFortran(AutotoolsPackage):

    # The default libtool.m4 is too old to handle NAG compiler properly:
    # https://github.com/Unidata/netcdf-fortran/issues/94
-    patch('nag.patch', when='@:4.4.4%nag')
+    # Moreover, Libtool can't handle '-pthread' flag coming from libcurl,
+    # doesn't inject convenience libraries into the shared ones, and is unable
+    # to detect NAG when it is called with an MPI wrapper.
+    patch('nag_libtool_2.4.2.patch', when='@:4.4.4%nag')
+    patch('nag_libtool_2.4.6.patch', when='@4.4.5:%nag')
+
+    # Enable 'make check' for NAG, which is too strict.
+    patch('nag_testing.patch', when='@4.4.5%nag')
+
+    # File fortran/nf_logging.F90 is compiled without -DLOGGING, which leads
+    # to missing symbols in the library. Additionally, the patch enables
+    # building with NAG, which refuses to compile empty source files (see also
+    # comments in the patch):
+    patch('logging.patch', when='@:4.4.5')
+
+    # Prevent excessive linking to system libraries. Without this patch the
+    # library might get linked to the system installation of libcurl. See
+    # https://github.com/Unidata/netcdf-fortran/commit/0a11f580faebbc1c4dce68bf5135709d1c7c7cc1#diff-67e997bcfdac55191033d57a16d1408a
+    patch('excessive_linking.patch', when='@4.4.5')

    # Parallel builds do not work in the fortran directory. This patch is
    # derived from https://github.com/Unidata/netcdf-fortran/pull/211
    patch('no_parallel_build.patch', when='@4.5.2')

    def flag_handler(self, name, flags):
+        config_flags = None
+
        if name in ['cflags', 'fflags'] and '+pic' in self.spec:
-            flags.append(self.compiler.pic_flag)
+            # Unlike NetCDF-C, we add PIC flag only when +pic. Adding the
+            # flags also when ~shared would make it impossible to build a
+            # static-only version of the library with NAG.
+            config_flags = [self.compiler.pic_flag]
        elif name == 'cppflags':
-            flags.append(self.spec['netcdf-c'].headers.cpp_flags)
+            config_flags = [self.spec['netcdf-c'].headers.cpp_flags]
        elif name == 'ldflags':
            # We need to specify LDFLAGS to get correct dependency_libs
            # in libnetcdff.la, so packages that use libtool for linking
            # could correctly link to all the dependencies even when the
            # building takes place outside of Spack environment, i.e.
            # without Spack's compiler wrappers.
-            flags.append(self.spec['netcdf-c'].libs.search_flags)
+            config_flags = [self.spec['netcdf-c'].libs.search_flags]

-        return None, None, flags
+        return flags, None, config_flags

    @property
    def libs(self):
        libraries = ['libnetcdff']

-        # This package installs both shared and static libraries. Permit
-        # clients to query which one they want.
        query_parameters = self.spec.last_query.extra_parameters
-        shared = 'shared' in query_parameters

-        return find_libraries(
+        if 'shared' in query_parameters:
+            shared = True
+        elif 'static' in query_parameters:
+            shared = False
+        else:
+            shared = '+shared' in self.spec
+
+        libs = find_libraries(
            libraries, root=self.prefix, shared=shared, recursive=True
        )

+        if libs:
+            return libs
+
+        msg = 'Unable to recursively locate {0} {1} libraries in {2}'
+        raise spack.error.NoLibrariesError(
+            msg.format('shared' if shared else 'static',
+                       self.spec.name,
+                       self.spec.prefix))
+
    def configure_args(self):
-        config_args = []
+        config_args = self.enable_or_disable('shared')
+        config_args.append('--enable-static')

        if '+mpi' in self.spec:
            config_args.append('CC=%s' % self.spec['mpi'].mpicc)
@@ -77,3 +117,8 @@ def configure_args(self):
            config_args.append('F77=%s' % self.spec['mpi'].mpif77)

        return config_args
+
+    @when('@:4.4.5')
+    def check(self):
+        with working_dir(self.build_directory):
+            make('check', parallel=False)