new packages: biopieces and dependencies (#6478)

This also adds the tcl, tk, and libx11 dependencies to ruby. All other
changes are new packages.

var/spack/repos/builtin/packages/biopieces/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+import distutils.dir_util
+
+
+class Biopieces(Package):
+    """The Biopieces are a collection of bioinformatics tools that can be
+       pieced together in a very easy and flexible manner to perform both
+       simple and complex tasks."""
+
+    homepage = "http://maasha.github.io/biopieces/"
+    url      = "https://github.com/maasha/biopieces/archive/2.0.tar.gz"
+
+    version('2016-04-12', commit='982f80f7c55e2cae67737d80fe35a4e784762856',
+            git='https://github.com/maasha/biopieces.git', submodules=True)
+
+    depends_on('perl', type=('build', 'run'))
+    depends_on('perl-module-build', type=('build', 'run'))
+    depends_on('perl-bit-vector', type=('build', 'run'))
+    depends_on('perl-svg', type=('build', 'run'))
+    depends_on('perl-term-readkey', type=('build', 'run'))
+    depends_on('perl-time-hires', type=('build', 'run'))
+    depends_on('perl-dbi', type=('build', 'run'))
+    depends_on('perl-xml-parser', type=('build', 'run'))
+    depends_on('perl-carp-clan', type=('build', 'run'))
+    depends_on('perl-class-inspector', type=('build', 'run'))
+    depends_on('perl-html-parser', type=('build', 'run'))
+    depends_on('perl-lwp', type=('build', 'run'))
+    depends_on('perl-soap-lite', type=('build', 'run'))
+    depends_on('perl-uri', type=('build', 'run'))
+    depends_on('perl-inline', type=('build', 'run'))
+    depends_on('perl-inline-c', type=('build', 'run'))
+    depends_on('perl-parse-recdescent', type=('build', 'run'))
+    depends_on('perl-version', type=('build', 'run'))
+    depends_on('perl-dbfile', type=('build', 'run'))
+    depends_on('perl-dbd-mysql', type=('build', 'run'))
+
+    depends_on('ruby@1.9:')
+    depends_on('ruby-gnuplot')
+    depends_on('ruby-narray')
+    depends_on('ruby-rubyinline')
+    depends_on('ruby-terminal-table')
+
+    depends_on('python@2.6:', type=('build', 'run'))
+    depends_on('blast-plus')
+    depends_on('muscle')
+    depends_on('mummer')
+    depends_on('blat')
+    depends_on('vmatch')
+    depends_on('bowtie')
+    depends_on('bwa')
+    depends_on('usearch')
+    depends_on('velvet')
+    depends_on('idba')
+    depends_on('ray')
+    depends_on('scan-for-matches')
+
+    def install(self, spec, prefix):
+        distutils.dir_util.copy_tree(".", prefix)
+
+    def setup_environment(self, spack_env, run_env):
+        # Note: user will need to set environment variables on their own,
+        # dependent on where they will want data to be located:
+        #    BP_DATA - Contains genomic data etc.
+        #    BP_TMP - Required temporary directory
+        #    BP_LOG - Required log directory
+        run_env.prepend_path('BP_DIR', prefix)

var/spack/repos/builtin/packages/perl-bit-vector/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlBitVector(PerlPackage):
+    """Efficient bit vector, set of integers and "big int" math library"""
+
+    homepage = "http://search.cpan.org/~stbey/Bit-Vector-7.4/Vector.pod"
+    url      = "http://search.cpan.org/CPAN/authors/id/S/ST/STBEY/Bit-Vector-7.4.tar.gz"
+
+    version('7.4', 'bf67f144e5be5327ed79d4c69e6e0086')
+
+    depends_on('perl-carp-clan', type=('build', 'run'))

var/spack/repos/builtin/packages/perl-carp-clan/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlCarpClan(PerlPackage):
+    """Report errors from perspective of caller of a "clan" of modules"""
+
+    homepage = "http://search.cpan.org/~kentnl/Carp-Clan-6.06/lib/Carp/Clan.pod"
+    url      = "http://search.cpan.org/CPAN/authors/id/K/KE/KENTNL/Carp-Clan-6.06.tar.gz"
+
+    version('6.06', 'c562a35c48f43665fab735cdc7fe3cb2')
+
+    depends_on('perl-test-exception', type=('build', 'run'))
+    depends_on('perl-sub-uplevel', type=('build', 'run'))

var/spack/repos/builtin/packages/perl-class-inspector/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlClassInspector(PerlPackage):
+    """Get information about a class and its structure"""
+
+    homepage = "http://search.cpan.org/~plicease/Class-Inspector-1.32/lib/Class/Inspector.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/P/PL/PLICEASE/Class-Inspector-1.32.tar.gz"
+
+    version('1.32', 'db471d6ecf47fa054726553319b7c34f')

var/spack/repos/builtin/packages/perl-dbd-mysql/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlDbdMysql(PerlPackage):
+    """MySQL driver for the Perl5 Database Interface (DBI)"""
+
+    homepage = "http://search.cpan.org/~michielb/DBD-mysql-4.043/lib/DBD/mysql.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/M/MI/MICHIELB/DBD-mysql-4.043.tar.gz"
+
+    version('4.043', '4a00dd7f1c057931147c65dfc4901c36')
+
+    depends_on('perl-test-deep', type=('build', 'run'))
+    depends_on('perl-dbi', type=('build', 'run'))
+    depends_on('mariadb@:10.1.23')

var/spack/repos/builtin/packages/perl-encode-locale/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlEncodeLocale(PerlPackage):
+    """Determine the locale encoding"""
+
+    homepage = "http://search.cpan.org/~gaas/Encode-Locale-1.05/lib/Encode/Locale.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/Encode-Locale-1.05.tar.gz"
+
+    version('1.05', 'fcfdb8e4ee34bcf62aed429b4a23db27')

var/spack/repos/builtin/packages/perl-file-copy-recursive/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlFileCopyRecursive(PerlPackage):
+    """Perl extension for recursively copying files and directories"""
+
+    homepage = "http://search.cpan.org/~dmuey/File-Copy-Recursive-0.38/Recursive.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/D/DM/DMUEY/File-Copy-Recursive-0.38.tar.gz"
+
+    version('0.38', 'e76dc75ab456510d67c6c3a95183f72f')

var/spack/repos/builtin/packages/perl-file-listing/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlFileListing(PerlPackage):
+    """Parse directory listing"""
+
+    homepage = "http://search.cpan.org/~gaas/File-Listing-6.04/lib/File/Listing.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/File-Listing-6.04.tar.gz"
+
+    version('6.04', '83f636b477741f3a014585bb9cc079a6')
+
+    depends_on('perl-http-date', type=('build', 'run'))

var/spack/repos/builtin/packages/perl-file-sharedir-install/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlFileSharedirInstall(PerlPackage):
+    """Install shared files"""
+
+    homepage = "http://search.cpan.org/~ether/File-ShareDir-Install-0.11/lib/File/ShareDir/Install.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/File-ShareDir-Install-0.11.tar.gz"
+
+    version('0.11', '61107e6ce6eee42bf29525b1a4d029e0')
+
+    depends_on('perl-module-build', type='build')

var/spack/repos/builtin/packages/perl-file-slurp-tiny/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlFileSlurpTiny(PerlPackage):
+    """A simple, sane and efficient file slurper"""
+
+    homepage = "http://search.cpan.org/~leont/File-Slurp-Tiny-0.004/lib/File/Slurp/Tiny.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/File-Slurp-Tiny-0.004.tar.gz"
+
+    version('0.004', '7575b81543281ea57cdb7e5eb3f73264')

var/spack/repos/builtin/packages/perl-html-parser/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlHtmlParser(PerlPackage):
+    """HTML parser class"""
+
+    homepage = "http://search.cpan.org/~gaas/HTML-Parser-3.72/Parser.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/HTML-Parser-3.72.tar.gz"
+
+    version('3.72', 'eb7505e5f626913350df9dd4a03d54a8')
+
+    depends_on('perl-html-tagset', type=('build', 'run'))

var/spack/repos/builtin/packages/perl-html-tagset/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlHtmlTagset(PerlPackage):
+    """Data tables useful in parsing HTML"""
+
+    homepage = "http://search.cpan.org/~petdance/HTML-Tagset-3.20/Tagset.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/P/PE/PETDANCE/HTML-Tagset-3.20.tar.gz"
+
+    version('3.20', 'd2bfa18fe1904df7f683e96611e87437')

var/spack/repos/builtin/packages/perl-http-cookies/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlHttpCookies(PerlPackage):
+    """HTTP cookie jars"""
+
+    homepage = "http://search.cpan.org/~oalders/HTTP-Cookies-6.04/lib/HTTP/Cookies.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/HTTP-Cookies-6.04.tar.gz"
+
+    version('6.04', '7bf1e277bd5c886bc18d21eb8423b65f')
+
+    depends_on('perl-uri', type=('build', 'run'))
+    depends_on('perl-http-message', type=('build', 'run'))

var/spack/repos/builtin/packages/perl-http-daemon/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlHttpDaemon(PerlPackage):
+    """A simple http server class"""
+
+    homepage = "http://search.cpan.org/~gaas/HTTP-Daemon-6.01/lib/HTTP/Daemon.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/HTTP-Daemon-6.01.tar.gz"
+
+    version('6.01', 'ed0ae02d25d7f1e89456d4d69732adc2')
+
+    depends_on('perl-lwp-mediatypes', type=('build', 'run'))
+    depends_on('perl-http-message', type=('build', 'run'))

var/spack/repos/builtin/packages/perl-http-date/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlHttpDate(PerlPackage):
+    """Date conversion routines"""
+
+    homepage = "http://search.cpan.org/~gaas/HTTP-Date-6.02/lib/HTTP/Date.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/HTTP-Date-6.02.tar.gz"
+
+    version('6.02', '52b7a0d5982d61be1edb217751d7daba')

var/spack/repos/builtin/packages/perl-http-message/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlHttpMessage(PerlPackage):
+    """HTTP style message (base class)"""
+
+    homepage = "http://search.cpan.org/~oalders/HTTP-Message-6.13/lib/HTTP/Status.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/HTTP-Message-6.13.tar.gz"
+
+    version('6.13', '4c1b7c6ee114c1cff69379ec9651d9ac')
+
+    depends_on('perl-lwp-mediatypes', type=('build', 'run'))
+    depends_on('perl-encode-locale', type=('build', 'run'))
+    depends_on('perl-io-html', type=('build', 'run'))
+    depends_on('perl-try-tiny', type=('build', 'run'))
+    depends_on('perl-uri', type=('build', 'run'))
+    depends_on('perl-http-date', type=('build', 'run'))

var/spack/repos/builtin/packages/perl-http-negotiate/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlHttpNegotiate(PerlPackage):
+    """Choose a variant to serve"""
+
+    homepage = "http://search.cpan.org/~gaas/HTTP-Negotiate-6.01/lib/HTTP/Negotiate.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/HTTP-Negotiate-6.01.tar.gz"
+
+    version('6.01', '1236195250e264d7436e7bb02031671b')
+
+    depends_on('perl-http-message', type=('build', 'run'))

var/spack/repos/builtin/packages/perl-inline-c/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlInlineC(PerlPackage):
+    """C Language Support for Inline"""
+
+    homepage = "http://search.cpan.org/~tinita/Inline-C-0.78/lib/Inline/C.pod"
+    url      = "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/Inline-C-0.78.tar.gz"
+
+    version('0.78', '710a454b5337b1cbf3f2ae5c8c45b413')
+
+    depends_on('perl-yaml-libyaml', type=('build', 'run'))
+    depends_on('perl-parse-recdescent', type=('build', 'run'))
+    depends_on('perl-inline', type=('build', 'run'))
+    depends_on('perl-pegex', type=('build', 'run'))
+    depends_on('perl-file-copy-recursive', type=('build', 'run'))

var/spack/repos/builtin/packages/perl-inline/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlInline(PerlPackage):
+    """Write Perl Subroutines in Other Programming Languages"""
+
+    homepage = "http://search.cpan.org/~ingy/Inline-0.80/lib/Inline.pod"
+    url      = "http://search.cpan.org/CPAN/authors/id/I/IN/INGY/Inline-0.80.tar.gz"
+
+    version('0.80', '510bbac46e727bcaf240b7feac2646c9')
+
+    depends_on('perl-test-warn', type=('build', 'run'))

var/spack/repos/builtin/packages/perl-io-html/package.py

+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PerlIoHtml(PerlPackage):
+    """Open an HTML file with automatic charset detection."""
+
+    homepage = "http://search.cpan.org/~cjm/IO-HTML-1.001/lib/IO/HTML.pm"
+    url      = "http://search.cpan.org/CPAN/authors/id/C/CJ/CJM/IO-HTML-1.001.tar.gz"
+
+    version('1.001', '3f8958718844dc96b9f6946f21d70d22')