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Commit 13a23388 authored by Sylvester Joosten's avatar Sylvester Joosten
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updated to use debian/gcc10.2 based container

parent 7a6a496e
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1 merge request!10New v2.2.0 release version
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containers/builder/Dockerfile
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# Builder with Argonne EIC software # Builder with Argonne EIC software
# #
FROM eicweb.phy.anl.gov:4567/containers/image_recipes/ubuntu_spack:0.15.3 FROM eicweb.phy.anl.gov:4567/containers/image_recipes/debian_spack:0.15.4
LABEL maintainer="Sylvester Joosten <sjoosten@anl.gov>" \ LABEL maintainer="Sylvester Joosten <sjoosten@anl.gov>" \
name="eic_builder" \ name="eic_builder" \
group="eic_builder" \ group="eic_builder" \
march="native" \ march="native" \
basedist="ubuntu" \ basedist="debian" \
base="ubuntu" base="debian"
ENV DOCKERFILE_BASE=ubuntu \ ENV DOCKERFILE_BASE=debian \
DOCKERFILE_DISTRO=ubuntu \ DOCKERFILE_DISTRO=debian \
DOCKERFILE_DISTRO_VERSION=20.04 \ DOCKERFILE_DISTRO_VERSION=20200803-testing \
SPACK_ROOT=/opt/spack \ SPACK_ROOT=/opt/spack \
DEBIAN_FRONTEND=noninteractive \ DEBIAN_FRONTEND=noninteractive \
CURRENTLY_BUILDING_DOCKER_IMAGE=1 \ CURRENTLY_BUILDING_DOCKER_IMAGE=1 \
...@@ -19,7 +19,6 @@ ENV DOCKERFILE_BASE=ubuntu \ ...@@ -19,7 +19,6 @@ ENV DOCKERFILE_BASE=ubuntu \
## Ensure an up-to-date custom package list ## Ensure an up-to-date custom package list
RUN rm -rf $SPACK_ROOT/np-spack \ RUN rm -rf $SPACK_ROOT/np-spack \
&& echo "Update spack for v2.1.3" \
&& git clone https://eicweb.phy.anl.gov/EIC/np-spack.git $SPACK_ROOT/np-spack \ && git clone https://eicweb.phy.anl.gov/EIC/np-spack.git $SPACK_ROOT/np-spack \
&& cd $SPACK_ROOT/np-spack && git checkout v`spack --version` && cd - \ && cd $SPACK_ROOT/np-spack && git checkout v`spack --version` && cd - \
&& rm -rf $SPACK_ROOT/np-spack/.git \ && rm -rf $SPACK_ROOT/np-spack/.git \
...@@ -73,7 +72,7 @@ RUN cd /opt/spack-environment \ ...@@ -73,7 +72,7 @@ RUN cd /opt/spack-environment \
&& spack env activate . \ && spack env activate . \
&& export PODIO=`spack find -p podio | grep software | awk '{print $2}'` \ && export PODIO=`spack find -p podio | grep software | awk '{print $2}'` \
&& echo "export PODIO=${PODIO};" >> /etc/profile.d/z10_spack_environment.sh \ && echo "export PODIO=${PODIO};" >> /etc/profile.d/z10_spack_environment.sh \
&& echo "export BINARY_TAG=x86_64-linux-gcc9-opt" >> /etc/profile.d/z10_spack_environment.sh && echo "export BINARY_TAG=x86_64-linux-gcc10-opt" >> /etc/profile.d/z10_spack_environment.sh
## make sure we have the entrypoints setup correctly ## make sure we have the entrypoints setup correctly
ENTRYPOINT [] ENTRYPOINT []
......
containers/builder/spack.yaml
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spack: spack:
specs: specs:
- cmake@3.17.3 - cmake@3.18.1
- fmt@6.1.2 cxxstd=17 - fmt@6.1.2 cxxstd=17
- spdlog@1.5.0 - spdlog@1.5.0
- nlohmann-json - nlohmann-json
- heppdt@3.04.01 - heppdt@3.04.01
- clhep@2.4.1.3 cxxstd=17 - clhep@2.4.1.3 cxxstd=17
- eigen@3.3.7 - eigen@3.3.7
- python@3.7.7 - python@3.7.8
- py-pip - py-pip
- py-numpy - py-numpy
- py-pyyaml - py-pyyaml
- xrootd@4.12.3 cxxstd=17 +python - xrootd@4.12.3 cxxstd=17 +python
- root@6.22.00 cxxstd=17 +dataframe +fftw +fortran +gdml +http +mlp +pythia8 +root7 +tmva +vc +xrootd +ssl ^mesa+opengl -llvm -osmesa - root@6.22.00 cxxstd=17 +fftw +fortran +gdml +http +mlp +pythia8 +root7 +tmva +vc +xrootd +ssl ^mesa+opengl -llvm -osmesa
- pythia8@8244 - pythia8@8244
- hepmc3@3.2.2 +python +rootio - hepmc3@3.2.2 +python +rootio
- stow@2.2.2 - stow@2.2.2
......
containers/release/bashrc
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...@@ -60,8 +60,8 @@ alias snano='sedit' ...@@ -60,8 +60,8 @@ alias snano='sedit'
export CLICOLOR=1 export CLICOLOR=1
export LS_COLORS='no=00:fi=00:di=00;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.ogg=01;35:*.mp3=01;35:*.wav=01;35:*.xml=00;31:' export LS_COLORS='no=00:fi=00:di=00;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.ogg=01;35:*.mp3=01;35:*.wav=01;35:*.xml=00;31:'
#export GREP_OPTIONS='--color=auto' #deprecated #export GREP_OPTIONS='--color=auto' #deprecated
alias grep="`which grep` $GREP_OPTIONS" #alias grep="/usr/bin/grep $GREP_OPTIONS"
unset GREP_OPTIONS #unset GREP_OPTIONS
# Color for manpages in less makes manpages a little easier to read # Color for manpages in less makes manpages a little easier to read
export LESS_TERMCAP_mb=$'\E[01;31m' export LESS_TERMCAP_mb=$'\E[01;31m'
...@@ -72,39 +72,9 @@ export LESS_TERMCAP_so=$'\E[01;44;33m' ...@@ -72,39 +72,9 @@ export LESS_TERMCAP_so=$'\E[01;44;33m'
export LESS_TERMCAP_ue=$'\E[0m' export LESS_TERMCAP_ue=$'\E[0m'
export LESS_TERMCAP_us=$'\E[01;32m' export LESS_TERMCAP_us=$'\E[01;32m'
#######################################################
# MACHINE SPECIFIC ALIAS'S
#######################################################
# Alias's for SSH
# alias SERVERNAME='ssh YOURWEBSITE.com -l USERNAME -p PORTNUMBERHERE'
# Alias's to change the directory
#alias web='cd /var/www/html'
# Alias's to mount ISO files
# mount -o loop /home/NAMEOFISO.iso /home/ISOMOUNTDIR/
# umount /home/NAMEOFISO.iso
# (Both commands done as root only.)
####################################################### #######################################################
# GENERAL ALIAS'S # GENERAL ALIAS'S
####################################################### #######################################################
# To temporarily bypass an alias, we preceed the command with a \
# EG: the ls command is aliased, but to use the normal ls command you would type \ls
# Add an "alert" alias for long running commands. Use like so:
# sleep 10; alert
alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
# Edit this .bashrc file
#alias ebrc='edit ~/.bashrc'
# Show help for this .bashrc file
#alias hlp='less ~/.bashrc_help'
# alias to show the date
alias da='date "+%Y-%m-%d %A %T %Z"'
# Alias's to modified commands # Alias's to modified commands
alias cp='cp -i' alias cp='cp -i'
...@@ -175,32 +145,6 @@ alias countfiles="for t in files links directories; do echo \`find . -type \${t: ...@@ -175,32 +145,6 @@ alias countfiles="for t in files links directories; do echo \`find . -type \${t:
# To see if a command is aliased, a file, or a built-in command # To see if a command is aliased, a file, or a built-in command
alias checkcommand="type -t" alias checkcommand="type -t"
# Show current network connections to the server
alias ipview="netstat -anpl | grep :80 | awk {'print \$5'} | cut -d\":\" -f1 | sort | uniq -c | sort -n | sed -e 's/^ *//' -e 's/ *\$//'"
# Show open ports
alias openports='netstat -nape --inet'
# Alias's for safe and forced reboots
alias rebootsafe='sudo shutdown -r now'
alias rebootforce='sudo shutdown -r -n now'
# Alias's to show disk space and space used in a folder
alias diskspace="du -S | sort -n -r |more"
alias folders='du -h --max-depth=1'
alias folderssort='find . -maxdepth 1 -type d -print0 | xargs -0 du -sk | sort -rn'
alias tree='tree -CAhF --dirsfirst'
alias treed='tree -CAFd'
alias mountedinfo='df -hT'
# Alias's for archives
alias mktar='tar -cvf'
alias mkbz2='tar -cvjf'
alias mkgz='tar -cvzf'
alias untar='tar -xvf'
alias unbz2='tar -xvjf'
alias ungz='tar -xvzf'
# Show all logs in /var/log # Show all logs in /var/log
alias logs="sudo find /var/log -type f -exec file {} \; | grep 'text' | cut -d' ' -f1 | sed -e's/:$//g' | grep -v '[0-9]$' | xargs tail -f" alias logs="sudo find /var/log -type f -exec file {} \; | grep 'text' | cut -d' ' -f1 | sed -e's/:$//g' | grep -v '[0-9]$' | xargs tail -f"
...@@ -328,47 +272,6 @@ pwdtail () ...@@ -328,47 +272,6 @@ pwdtail ()
pwd|awk -F/ '{nlast = NF -1;print $nlast"/"$NF}' pwd|awk -F/ '{nlast = NF -1;print $nlast"/"$NF}'
} }
# Show the current distribution
distribution ()
{
local dtype
# Assume unknown
dtype="unknown"
# First test against Fedora / RHEL / CentOS / generic Redhat derivative
if [ -r /etc/rc.d/init.d/functions ]; then
source /etc/rc.d/init.d/functions
[ zz`type -t passed 2>/dev/null` == "zzfunction" ] && dtype="redhat"
# Then test against SUSE (must be after Redhat,
# I've seen rc.status on Ubuntu I think? TODO: Recheck that)
elif [ -r /etc/rc.status ]; then
source /etc/rc.status
[ zz`type -t rc_reset 2>/dev/null` == "zzfunction" ] && dtype="suse"
# Then test against Debian, Ubuntu and friends
elif [ -r /lib/lsb/init-functions ]; then
source /lib/lsb/init-functions
[ zz`type -t log_begin_msg 2>/dev/null` == "zzfunction" ] && dtype="debian"
# Then test against Gentoo
elif [ -r /etc/init.d/functions.sh ]; then
source /etc/init.d/functions.sh
[ zz`type -t ebegin 2>/dev/null` == "zzfunction" ] && dtype="gentoo"
# For Mandriva we currently just test if /etc/mandriva-release exists
# and isn't empty (TODO: Find a better way :)
elif [ -s /etc/mandriva-release ]; then
dtype="mandriva"
# For Slackware we currently just test if /etc/slackware-version exists
elif [ -s /etc/slackware-version ]; then
dtype="slackware"
fi
echo $dtype
}
# Show the current version of the operating system # Show the current version of the operating system
ver () ver ()
{ {
...@@ -402,129 +305,6 @@ ver () ...@@ -402,129 +305,6 @@ ver ()
fi fi
} }
# Automatically install the needed support files for this .bashrc file
install_bashrc_support ()
{
local dtype
dtype=$(distribution)
if [ $dtype == "redhat" ]; then
sudo yum install multitail tree joe
elif [ $dtype == "suse" ]; then
sudo zypper install multitail
sudo zypper install tree
sudo zypper install joe
elif [ $dtype == "debian" ]; then
sudo apt-get install multitail tree joe
elif [ $dtype == "gentoo" ]; then
sudo emerge multitail
sudo emerge tree
sudo emerge joe
elif [ $dtype == "mandriva" ]; then
sudo urpmi multitail
sudo urpmi tree
sudo urpmi joe
elif [ $dtype == "slackware" ]; then
echo "No install support for Slackware"
else
echo "Unknown distribution"
fi
}
# Show current network information
netinfo ()
{
echo "--------------- Network Information ---------------"
/sbin/ifconfig | awk /'inet addr/ {print $2}'
echo ""
/sbin/ifconfig | awk /'Bcast/ {print $3}'
echo ""
/sbin/ifconfig | awk /'inet addr/ {print $4}'
/sbin/ifconfig | awk /'HWaddr/ {print $4,$5}'
echo "---------------------------------------------------"
}
# IP address lookup
alias whatismyip="whatsmyip"
function whatsmyip ()
{
# Dumps a list of all IP addresses for every device
# /sbin/ifconfig |grep -B1 "inet addr" |awk '{ if ( $1 == "inet" ) { print $2 } else if ( $2 == "Link" ) { printf "%s:" ,$1 } }' |awk -F: '{ print $1 ": " $3 }';
# Internal IP Lookup
echo -n "Internal IP: " ; /sbin/ifconfig eth0 | grep "inet addr" | awk -F: '{print $2}' | awk '{print $1}'
# External IP Lookup
echo -n "External IP: " ; wget http://smart-ip.net/myip -O - -q
}
# View Apache logs
apachelog ()
{
if [ -f /etc/httpd/conf/httpd.conf ]; then
cd /var/log/httpd && ls -xAh && multitail --no-repeat -c -s 2 /var/log/httpd/*_log
else
cd /var/log/apache2 && ls -xAh && multitail --no-repeat -c -s 2 /var/log/apache2/*.log
fi
}
# Edit the Apache configuration
apacheconfig ()
{
if [ -f /etc/httpd/conf/httpd.conf ]; then
sedit /etc/httpd/conf/httpd.conf
elif [ -f /etc/apache2/apache2.conf ]; then
sedit /etc/apache2/apache2.conf
else
echo "Error: Apache config file could not be found."
echo "Searching for possible locations:"
sudo updatedb && locate httpd.conf && locate apache2.conf
fi
}
# Edit the PHP configuration file
phpconfig ()
{
if [ -f /etc/php.ini ]; then
sedit /etc/php.ini
elif [ -f /etc/php/php.ini ]; then
sedit /etc/php/php.ini
elif [ -f /etc/php5/php.ini ]; then
sedit /etc/php5/php.ini
elif [ -f /usr/bin/php5/bin/php.ini ]; then
sedit /usr/bin/php5/bin/php.ini
elif [ -f /etc/php5/apache2/php.ini ]; then
sedit /etc/php5/apache2/php.ini
else
echo "Error: php.ini file could not be found."
echo "Searching for possible locations:"
sudo updatedb && locate php.ini
fi
}
# Edit the MySQL configuration file
mysqlconfig ()
{
if [ -f /etc/my.cnf ]; then
sedit /etc/my.cnf
elif [ -f /etc/mysql/my.cnf ]; then
sedit /etc/mysql/my.cnf
elif [ -f /usr/local/etc/my.cnf ]; then
sedit /usr/local/etc/my.cnf
elif [ -f /usr/bin/mysql/my.cnf ]; then
sedit /usr/bin/mysql/my.cnf
elif [ -f ~/my.cnf ]; then
sedit ~/my.cnf
elif [ -f ~/.my.cnf ]; then
sedit ~/.my.cnf
else
echo "Error: my.cnf file could not be found."
echo "Searching for possible locations:"
sudo updatedb && locate my.cnf
fi
}
# For some reason, rot13 pops up everywhere # For some reason, rot13 pops up everywhere
rot13 () { rot13 () {
if [ $# -eq 0 ]; then if [ $# -eq 0 ]; then
......
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