add photons and pions

benchmarks/sampling_ecal/run_emcal_barrel_photons.sh

+#!/bin/bash
+
+if [[ ! -n  "${JUGGLER_DETECTOR}" ]] ; then
+  export JUGGLER_DETECTOR="topside"
+fi
+export CB_EMCAL_COMPACT_PATH=${DETECTOR_PATH}/${JUGGLER_DETECTOR}.xml
+
+
+if [[ ! -n  "${CB_EMCAL_NUMEV}" ]] ; then
+  export CB_EMCAL_NUMEV=1000
+fi
+
+if [[ ! -n  "${CB_EMCAL_ENERGY}" ]] ; then
+  export CB_EMCAL_ENERGY=5.0
+fi
+
+
+if [[ ! -n "${CB_EMCAL_SAMP_FRAC}" ]] ; then
+  export CB_EMCAL_SAMP_FRAC=0.014
+fi
+
+export CB_EMCAL_NAME_TAG="emcal_barrel_uniform_photons"
+export CB_EMCAL_GEN_FILE="${CB_EMCAL_NAME_TAG}.hepmc"
+
+export CB_EMCAL_SIM_FILE="sim_${CB_EMCAL_NAME_TAG}.root"
+export CB_EMCAL_REC_FILE="rec_${CB_EMCAL_NAME_TAG}.root"
+
+echo "CB_EMCAL_NUMEV = ${CB_EMCAL_NUMEV}"
+echo "CB_EMCAL_COMPACT_PATH = ${CB_EMCAL_COMPACT_PATH}"
+
+# Generate the input events
+python benchmarks/sampling_ecal/scripts/gen_particles.py ${CB_EMCAL_GEN_FILE} \
+    --angmin 90 --angmax 90 --parray ${CB_EMCAL_ENERGY} --particles="22"
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running script: generating input events"
+  exit 1
+fi
+
+ls -lh ${CB_EMCAL_GEN_FILE}
+
+# Run geant4 simulations
+npsim --runType batch \
+      -v WARNING \
+      --part.minimalKineticEnergy 0.5*GeV  \
+      --numberOfEvents ${CB_EMCAL_NUMEV} \
+      --compactFile ${CB_EMCAL_COMPACT_PATH} \
+      --inputFiles ${CB_EMCAL_GEN_FILE} \
+      --outputFile ${CB_EMCAL_SIM_FILE}
+
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running npdet"
+  exit 1
+fi
+
+rootls -t "${CB_EMCAL_SIM_FILE}"
+
+# Directory for plots
+mkdir -p results
+
+# CB_EMCAL_OPTION_DIR=${JUGGLER_INSTALL_PREFIX}/Examples/options
+# CB_EMCAL_SCRIPT_DIR=${JUGGLER_INSTALL_PREFIX}/Examples/scripts/sampling_calorimeter
+CB_EMCAL_OPTION_DIR=benchmarks/sampling_ecal/options
+CB_EMCAL_SCRIPT_DIR=benchmarks/sampling_ecal/scripts
+
+# Run Juggler
+# xenv -x ${JUGGLER_INSTALL_PREFIX}/Juggler.xenv gaudirun.py ${CB_EMCAL_OPTION_DIR}/sampling_cluster3d.py
+gaudirun.py ${CB_EMCAL_OPTION_DIR}/sampling_cluster3d.py
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running juggler"
+  exit 1
+fi
+
+# check required python modules
+python -m pip install -r benchmarks/sampling_ecal/requirements.txt
+
+# Run analysis script
+python ${CB_EMCAL_SCRIPT_DIR}/draw_cluster_layers.py \
+    ${CB_EMCAL_REC_FILE} -e 0 --topo-size=1.0 --compact=${CB_EMCAL_COMPACT_PATH} -o results/photons
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running analysis script: draw_cluster_layers"
+  exit 1
+fi
+
+python ${CB_EMCAL_SCRIPT_DIR}/draw_cluster.py \
+    ${CB_EMCAL_REC_FILE} -e 0 --topo-size=2.0 --compact=${CB_EMCAL_COMPACT_PATH} -o results/photons
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running analysis script: draw_cluster"
+  exit 1
+fi
+
+python ${CB_EMCAL_SCRIPT_DIR}/energy_profile.py \
+    ${CB_EMCAL_REC_FILE} --type=EM --energy=${CB_EMCAL_ENERGY} -o results/photons \
+    --save=results/profile.csv --color=royalblue
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running analysis script: energy_profile"
+  exit 1
+fi
+
+
+root_filesize=$(stat --format=%s "${CB_EMCAL_REC_FILE}")
+if [[ "${CB_EMCAL_NUMEV}" -lt "500" ]] ; then
+  # file must be less than 10 MB to upload
+  if [[ "${root_filesize}" -lt "10000000" ]] ; then
+    cp ${CB_EMCAL_REC_FILE} results/.
+  fi
+fi
+

benchmarks/sampling_ecal/run_emcal_barrel_pion.sh

+#!/bin/bash
+
+if [[ ! -n  "${JUGGLER_DETECTOR}" ]] ; then
+  export JUGGLER_DETECTOR="topside"
+fi
+export CB_EMCAL_COMPACT_PATH=${DETECTOR_PATH}/${JUGGLER_DETECTOR}.xml
+
+
+if [[ ! -n  "${CB_EMCAL_NUMEV}" ]] ; then
+  export CB_EMCAL_NUMEV=1000
+fi
+
+if [[ ! -n  "${CB_EMCAL_ENERGY}" ]] ; then
+  export CB_EMCAL_ENERGY=5.0
+fi
+
+
+if [[ ! -n "${CB_EMCAL_SAMP_FRAC}" ]] ; then
+  export CB_EMCAL_SAMP_FRAC=0.014
+fi
+
+export CB_EMCAL_NAME_TAG="emcal_barrel_uniform_pions"
+export CB_EMCAL_GEN_FILE="${CB_EMCAL_NAME_TAG}.hepmc"
+
+export CB_EMCAL_SIM_FILE="sim_${CB_EMCAL_NAME_TAG}.root"
+export CB_EMCAL_REC_FILE="rec_${CB_EMCAL_NAME_TAG}.root"
+
+echo "CB_EMCAL_NUMEV = ${CB_EMCAL_NUMEV}"
+echo "CB_EMCAL_COMPACT_PATH = ${CB_EMCAL_COMPACT_PATH}"
+
+# Generate the input events
+python benchmarks/sampling_ecal/scripts/gen_particles.py ${CB_EMCAL_GEN_FILE} \
+    --angmin 90 --angmax 90 --parray ${CB_EMCAL_ENERGY} --particles="-211"
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running script: generating input events"
+  exit 1
+fi
+
+ls -lh ${CB_EMCAL_GEN_FILE}
+
+# Run geant4 simulations
+npsim --runType batch \
+      -v WARNING \
+      --part.minimalKineticEnergy 0.5*GeV  \
+      --numberOfEvents ${CB_EMCAL_NUMEV} \
+      --compactFile ${CB_EMCAL_COMPACT_PATH} \
+      --inputFiles ${CB_EMCAL_GEN_FILE} \
+      --outputFile ${CB_EMCAL_SIM_FILE}
+
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running npdet"
+  exit 1
+fi
+
+rootls -t "${CB_EMCAL_SIM_FILE}"
+
+# Directory for plots
+mkdir -p results
+
+# CB_EMCAL_OPTION_DIR=${JUGGLER_INSTALL_PREFIX}/Examples/options
+# CB_EMCAL_SCRIPT_DIR=${JUGGLER_INSTALL_PREFIX}/Examples/scripts/sampling_calorimeter
+CB_EMCAL_OPTION_DIR=benchmarks/sampling_ecal/options
+CB_EMCAL_SCRIPT_DIR=benchmarks/sampling_ecal/scripts
+
+# Run Juggler
+# xenv -x ${JUGGLER_INSTALL_PREFIX}/Juggler.xenv gaudirun.py ${CB_EMCAL_OPTION_DIR}/sampling_cluster3d.py
+gaudirun.py ${CB_EMCAL_OPTION_DIR}/sampling_cluster3d.py
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running juggler"
+  exit 1
+fi
+
+# check required python modules
+python -m pip install -r benchmarks/sampling_ecal/requirements.txt
+
+# Run analysis script
+python ${CB_EMCAL_SCRIPT_DIR}/draw_cluster_layers.py \
+    ${CB_EMCAL_REC_FILE} -e 0 --topo-size=1.0 --compact=${CB_EMCAL_COMPACT_PATH} -o results/pions
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running analysis script: draw_cluster_layers"
+  exit 1
+fi
+
+python ${CB_EMCAL_SCRIPT_DIR}/draw_cluster.py \
+    ${CB_EMCAL_REC_FILE} -e 0 --topo-size=2.0 --compact=${CB_EMCAL_COMPACT_PATH} -o results/pions
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running analysis script: draw_cluster"
+  exit 1
+fi
+
+python ${CB_EMCAL_SCRIPT_DIR}/energy_profile.py \
+    ${CB_EMCAL_REC_FILE} --type=EM --energy=${CB_EMCAL_ENERGY} -o results/pions \
+    --save=results/profile.csv --color=royalblue
+if [[ "$?" -ne "0" ]] ; then
+  echo "ERROR running analysis script: energy_profile"
+  exit 1
+fi
+
+
+root_filesize=$(stat --format=%s "${CB_EMCAL_REC_FILE}")
+if [[ "${CB_EMCAL_NUMEV}" -lt "500" ]] ; then
+  # file must be less than 10 MB to upload
+  if [[ "${root_filesize}" -lt "10000000" ]] ; then
+    cp ${CB_EMCAL_REC_FILE} results/.
+  fi
+fi
+