Added output copies of input collections.

- using copier algo to get around bug (for now).
- note the "2" appended to the output collection names.

ecal/emcal_electrons.sh

@@ -49,7 +49,7 @@ npsim --runType batch \
       --inputFiles ../${JUGGLER_FILE_NAME_TAG}.hepmc \
       --outputFile  ${JUGGLER_SIM_FILE}
 # Need to figure out how to pass file name to juggler from the commandline
-xenv -x /usr/local/Juggler.xenv gaudirun.py ../ecal/options/example_crystal.py
+xenv -x /usr/local/Juggler.xenv gaudirun.py ../ecal/options/crystal_calorimeter_reco.py
 ls -l
 popd
 

ecal/emcal_pi0s.sh

@@ -47,7 +47,7 @@ npsim --runType batch \
       --outputFile  ${JUGGLER_SIM_FILE}
 # Need to figure out how to pass file name to juggler from the commandline
 
-xenv -x /usr/local/Juggler.xenv gaudirun.py ../ecal/options/example_crystal.py
+xenv -x /usr/local/Juggler.xenv gaudirun.py ../ecal/options/crystal_calorimeter_reco.py
 ls -l
 
 popd

ecal/options/crystal_calorimeter_reco.py

 from Gaudi.Configuration import *
+import os
   
 from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
 from GaudiKernel import SystemOfUnits as units
 
-geo_service  = GeoSvc("GeoSvc", detectors=["topside.xml"])
-podioevent   = EICDataSvc("EventDataSvc", inputs=["sim_emcal_electrons.root"], OutputLevel=DEBUG)
+detector_name = "topside"
+if "JUGGLER_DETECTOR" in os.environ :
+  detector_name = str(os.environ["JUGGLER_DETECTOR"])
+
+# todo add checks
+input_sim_file  = str(os.environ["JUGGLER_SIM_FILE"])
+output_rec_file = str(os.environ["JUGGLER_REC_FILE"])
+n_events = str(os.environ["JUGGLER_N_EVENTS"])
+
+geo_service  = GeoSvc("GeoSvc", detectors=["{}.xml".format(detector_name)])
+podioevent   = EICDataSvc("EventDataSvc", inputs=[input_sim_file], OutputLevel=DEBUG)
 
 from Configurables import PodioInput
+from Configurables import Jug__Base__InputCopier_dd4pod__Geant4ParticleCollection_dd4pod__Geant4ParticleCollection_ as MCCopier
+from Configurables import Jug__Base__InputCopier_dd4pod__CalorimeterHitCollection_dd4pod__CalorimeterHitCollection_ as CalCopier
+
+
 from Configurables import Jug__Digi__CrystalEndcapsDigi as CrystalEndcapsDigi
 from Configurables import Jug__Reco__CrystalEndcapsReco as CrystalEndcapsReco
 from Configurables import Jug__Reco__CalorimeterIslandCluster as IslandCluster
 from Configurables import Jug__Reco__ClusterRecoCoG as RecoCoG
 
 podioinput = PodioInput("PodioReader", collections=["mcparticles","CrystalEcalHits"], OutputLevel=DEBUG)
+
+## copiers to get around input --> output copy bug. Note the "2" appended to the output collection.
+copier = MCCopier("MCCopier", inputCollection="mcparticles", outputCollection="mcparticles2",OutputLevel=DEBUG) 
+calcopier = CalCopier("CalCopier", inputCollection="CrystalEcalHits", outputCollection="CrystalEcalHits2",OutputLevel=DEBUG) 
+
 emcaldigi = CrystalEndcapsDigi("ecal_digi", inputHitCollection="CrystalEcalHits", outputHitCollection="RawDigiEcalHits")
 emcalreco = CrystalEndcapsReco("ecal_reco", inputHitCollection="RawDigiEcalHits", outputHitCollection="RecoEcalHits",
                                minModuleEdep=1.0*units.MeV)
@@ -21,14 +40,14 @@ emcalcluster = IslandCluster("emcal_cluster", inputHitCollection="RecoEcalHits",
                              minClusterCenterEdep=30*units.MeV, groupRange=2.0)
 clusterreco = RecoCoG("cluster_reco", clusterCollection="EcalClusters", logWeightBase=4.2, moduleDimZName="CrystalBox_z_length")
 
-out = PodioOutput("out", filename="sim_emcal_electrons_output.root")
+out = PodioOutput("out", filename=output_rec_file)
 
 out.outputCommands = ["keep *"]
 
 ApplicationMgr(
     TopAlg = [podioinput, emcaldigi, emcalreco, emcalcluster, clusterreco, out],
     EvtSel = 'NONE',
-    EvtMax   = 100000,
+    EvtMax   = n_events,
     ExtSvc = [podioevent],
     OutputLevel=DEBUG
  )