Lcrc Env

Environments to be loaded in the lcrc to use containers

CLAS12

See clas12/README.md.

eic-shell and lager-shell

hostname=`hostname`
if [[ $hostname == *"ilogin"* ]]; then
  source /lcrc/project/eic/improv/setup.sh
elif [[ $hostname == *"xoverlogin"* ]]; then
  source /lcrc/project/eic/xover/setup.sh
fi

export PATH="/lcrc/project/jlab/clas12/:$PATH"

or, simply

git@eicweb.phy.anl.gov:sangbaek/lcrc_env.git
cd lcrc_env
source setup.sh

using setup.sh

Sync with the local lcrc files

This is subideal, but the eic group and jlab group differ, so let's sync the files after updating the repo with the following macro.

./sync_after_updating_repo.sh

Submit the jobs

Here are the examples to run gemc chain (the same with osg).

I have 2M events in /lcrc/project/nanowire/sangbaek/lager/output/job_001/ehe4_ia1_jpsi_6/lunds and /lcrc/project/nanowire/sangbaek/lager/output/job_001/ehe4_ia1_jpsi_7/lunds.

Each file has 1k events.

Please update the file locations accordingly before job submission

Improv

Improv manages jobs with PBS.

• Useful commands: lcrc-quota sbank-list-allocations, qstat -u $USER, qdel [JOBID]

cd pbs_files
./convert.sh firstindex lastindex
qsub gemc_pipeline_firstindex_lastindex

Crossover

Crossover manages jobs with slurm.

• Useful commands: squeue -u $USER, sinfo, scontrol show jobid [JOBID], scancel [JOBID] scancel -u $USER

cd slurm_files
./convert.sh firstindex lastindex
sbatch gemc_pipeline_firstindex_lastindex