From f8acb95ad3f9d6e082abe7d6b2a705f9a6143b6b Mon Sep 17 00:00:00 2001
From: Glenn Johnson <glenn-johnson@uiowa.edu>
Date: Wed, 15 Jan 2020 11:32:18 -0600
Subject: [PATCH] Convert encoding of script in interproscan (#14356)
One of the perl scripts was encoded with ISO-8859-1, which caused the
sbang replacement process to fail when spack uses python3. This PR
converts the ps_scan script to UTF-8 encoding.
---
.../repos/builtin/packages/interproscan/package.py | 1 +
.../builtin/packages/interproscan/ps_scan.patch | 12 ++++++++++++
2 files changed, 13 insertions(+)
create mode 100644 var/spack/repos/builtin/packages/interproscan/ps_scan.patch
diff --git a/var/spack/repos/builtin/packages/interproscan/package.py b/var/spack/repos/builtin/packages/interproscan/package.py
index fe0a3acd1b..7ffb7c1da8 100644
--- a/var/spack/repos/builtin/packages/interproscan/package.py
+++ b/var/spack/repos/builtin/packages/interproscan/package.py
@@ -42,6 +42,7 @@ class Interproscan(Package):
patch('large-gid.patch', when='@5:')
patch('non-interactive.patch', when='@:4.8')
+ patch('ps_scan.patch', when='@:4.8')
def install(self, spec, prefix):
with working_dir('core'):
diff --git a/var/spack/repos/builtin/packages/interproscan/ps_scan.patch b/var/spack/repos/builtin/packages/interproscan/ps_scan.patch
new file mode 100644
index 0000000000..f34aa2c432
--- /dev/null
+++ b/var/spack/repos/builtin/packages/interproscan/ps_scan.patch
@@ -0,0 +1,12 @@
+diff -ru a/bin/ps_scan.pl b/bin/ps_scan.pl
+--- a/bin/ps_scan.pl 2020-01-01 14:07:54.243869822 -0600
++++ b/bin/ps_scan.pl 2020-01-01 14:08:03.786850313 -0600
+@@ -8,7 +8,7 @@
+ # Authors:
+ # Alexandre Gattiker
+ # Edouard de Castro; E-mail: ecastro@isb-sib.ch
+-# Béatrice Cuche (evaluated_by post-processing)
++# Béatrice Cuche (evaluated_by post-processing)
+ #
+ # Contributions:
+ # Lorenza Bordoli (repeat method)
--
GitLab