From d61f362211a62f6a6126ec33cbbc97604358f6f7 Mon Sep 17 00:00:00 2001
From: ilbiondo <61497728+ilbiondo@users.noreply.github.com>
Date: Thu, 30 Jul 2020 05:20:44 +0200
Subject: [PATCH] Updated iq-tree package (#17690)
---
var/spack/repos/builtin/packages/iq-tree/package.py | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/var/spack/repos/builtin/packages/iq-tree/package.py b/var/spack/repos/builtin/packages/iq-tree/package.py
index 9058a66f10..010ccdcae0 100644
--- a/var/spack/repos/builtin/packages/iq-tree/package.py
+++ b/var/spack/repos/builtin/packages/iq-tree/package.py
@@ -14,10 +14,12 @@ class IqTree(CMakePackage):
git = "https://github.com/Cibiv/IQ-TREE.git"
url = "https://github.com/Cibiv/IQ-TREE/archive/v1.6.12.tar.gz"
+ version('2.0.6', tag='v2.0.6', submodules=True)
version('1.6.12', sha256='9614092de7a157de82c9cc402b19cc8bfa0cb0ffc93b91817875c2b4bb46a284')
variant('openmp', default=True, description='Enable OpenMP support.')
variant('mpi', default=False, description='Enable MPI support.')
+ variant('lsd2', default=True, description='Axctivate Least Squares Dating.')
maintainers = ['ilbiondo']
@@ -30,13 +32,13 @@ class IqTree(CMakePackage):
def cmake_args(self):
- # Note that one has to specify "single" to get a single
- # threaded build. Otherwise OpenMP is assumed
-
spec = self.spec
args = []
iqflags = []
+ if '+lsd2' in spec:
+ args.append('-DUSE_LSD2=ON')
+
if '+openmp' in spec:
iqflags.append('omp')
--
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