From ac5b5724c6d42f19814dd97c2a3936d90f2a1c24 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=E5=81=A5=E7=BE=8E=E7=8C=AB?= <weijianwen@gmail.com>
Date: Wed, 10 Jan 2018 23:35:00 +0800
Subject: [PATCH] Add a new package: unblur. (#6867)
* Add a new package: unblur.
* Add a new package: unblur.
* Add a new package: unblur.
* Add a new package: unblur.
Conflicts:
var/spack/repos/builtin/packages/unblur/package.py
* Add a new package: unblur.
---
.../repos/builtin/packages/unblur/package.py | 72 +++++++++++++++++++
1 file changed, 72 insertions(+)
create mode 100644 var/spack/repos/builtin/packages/unblur/package.py
diff --git a/var/spack/repos/builtin/packages/unblur/package.py b/var/spack/repos/builtin/packages/unblur/package.py
new file mode 100644
index 0000000000..0b971d756d
--- /dev/null
+++ b/var/spack/repos/builtin/packages/unblur/package.py
@@ -0,0 +1,72 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Unblur(AutotoolsPackage):
+ """Unblur is used to align the frames of movies recorded on an electron
+ microscope to reduce image blurring due to beam-induced motion."""
+
+ homepage = "http://grigoriefflab.janelia.org/unblur"
+ url = "http://grigoriefflab.janelia.org/sites/default/files/unblur_1.0.2.tar.gz"
+
+ version('1.0.2', 'b6e367061cd0cef1b62a391a6289f681')
+
+ variant('openmp', default=True, description='Enable OpenMP support')
+ variant('shared', default=True, description='Dynamic linking')
+
+ depends_on('zlib')
+ depends_on('jpeg')
+ depends_on('libtiff')
+ depends_on('gsl')
+ depends_on('jbigkit')
+ depends_on('fftw@3:')
+ # Requires Intel Fortran compiler
+ conflicts('%gcc')
+ conflicts('%pgi')
+ conflicts('%clang')
+ conflicts('%cce')
+ conflicts('%xl')
+ conflicts('%xl_r')
+ conflicts('%nag')
+
+ configure_directory = 'src'
+
+ def patch(self):
+ filter_file(r'<<<<<<<.*', '', 'src/missing')
+
+ def configure_args(self):
+ spec = self.spec
+ return ['FC=ifort',
+ 'F77=ifort',
+ '--enable-static={0}'
+ .format('yes' if '~shared' in spec else 'no'),
+ '--enable-openmp={0}'
+ .format('yes' if '+openmp' in spec else 'no'),
+ '--enable-optimisations=yes']
+
+ def build(self, spec, prefix):
+ with working_dir('src'):
+ make(parallel=False)
--
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