From 8b0d29bec4dfed2030dd6c808876663d238b3cb3 Mon Sep 17 00:00:00 2001
From: Yifan Zhu <ifanzhu@foxmail.com>
Date: Fri, 22 Jun 2018 17:48:32 -0500
Subject: [PATCH] New package ncbi-magicblast (#8517)
* ncbi-magicblast: new package
* updated package.py
* updated ncbi-magicblast
---
.../packages/ncbi-magicblast/package.py | 41 +++++++++++++++++++
1 file changed, 41 insertions(+)
create mode 100644 var/spack/repos/builtin/packages/ncbi-magicblast/package.py
diff --git a/var/spack/repos/builtin/packages/ncbi-magicblast/package.py b/var/spack/repos/builtin/packages/ncbi-magicblast/package.py
new file mode 100644
index 0000000000..328d53fb44
--- /dev/null
+++ b/var/spack/repos/builtin/packages/ncbi-magicblast/package.py
@@ -0,0 +1,41 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class NcbiMagicblast(AutotoolsPackage):
+ """Magic-BLAST is a tool for mapping large next-generation RNA or DNA
+ sequencing runs against a whole genome or transcriptome. """
+
+ homepage = "https://ncbi.github.io/magicblast/"
+ url = "ftp://ftp.ncbi.nlm.nih.gov/blast/executables/magicblast/1.3.0/ncbi-magicblast-1.3.0-src.tar.gz"
+
+ version('1.3.0', '2615b919c1fe1bf7dc3d816392ab4420')
+
+ depends_on('lmdb')
+ configure_directory = 'c++'
+
+ def configure_args(self):
+ return ['--without-internal']
--
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