From 4c68d2e14e29705d426c803a9f0ce16a22473dd3 Mon Sep 17 00:00:00 2001
From: Dustin Lagoy <dustin.lagoy@gmail.com>
Date: Mon, 25 Mar 2019 18:03:02 -0700
Subject: [PATCH] py-netcdf4: avoid using system installs of dependencies
(#10885)
Use environment variables to point setup.py to Spack installations
of hdf5/netcdf
---
var/spack/repos/builtin/packages/py-netcdf4/package.py | 10 ++++++++++
1 file changed, 10 insertions(+)
diff --git a/var/spack/repos/builtin/packages/py-netcdf4/package.py b/var/spack/repos/builtin/packages/py-netcdf4/package.py
index d89a73b331..7409e6dafb 100644
--- a/var/spack/repos/builtin/packages/py-netcdf4/package.py
+++ b/var/spack/repos/builtin/packages/py-netcdf4/package.py
@@ -23,3 +23,13 @@ class PyNetcdf4(PythonPackage):
depends_on('netcdf')
depends_on('hdf5@1.8.0:')
+
+ def setup_environment(self, spack_env, run_env):
+ """Ensure installed netcdf and hdf5 libraries are used"""
+ # Explicitly set these variables so setup.py won't erroneously pick up
+ # system versions
+ spack_env.set('USE_SETUPCFG', '0')
+ spack_env.set('HDF5_INCDIR', self.spec['hdf5'].prefix.include)
+ spack_env.set('HDF5_LIBDIR', self.spec['hdf5'].prefix.lib)
+ spack_env.set('NETCDF4_INCDIR', self.spec['netcdf'].prefix.include)
+ spack_env.set('NETCDF4_LIBDIR', self.spec['netcdf'].prefix.lib)
--
GitLab