From 4b1c356a27adc68e62d801986e67ef60336685db Mon Sep 17 00:00:00 2001
From: Justin S <3630356+codeandkey@users.noreply.github.com>
Date: Tue, 14 Jan 2020 17:47:48 -0600
Subject: [PATCH] trnascan-se: add and configure infernal dependency (#14502)
* trnascan-se: add and configure infernal dep
* trnascan-se: use patch() for infernal config
---
var/spack/repos/builtin/packages/trnascan-se/package.py | 7 +++++++
1 file changed, 7 insertions(+)
diff --git a/var/spack/repos/builtin/packages/trnascan-se/package.py b/var/spack/repos/builtin/packages/trnascan-se/package.py
index 8a3eea7ab6..cad1a15e90 100644
--- a/var/spack/repos/builtin/packages/trnascan-se/package.py
+++ b/var/spack/repos/builtin/packages/trnascan-se/package.py
@@ -13,3 +13,10 @@ class TrnascanSe(AutotoolsPackage):
url = "http://trna.ucsc.edu/software/trnascan-se-2.0.0.tar.gz"
version('2.0.0', sha256='0dde1c07142e4bf77b21d53ddf3eeb1ef8c52248005a42323d13f8d7c798100c')
+
+ depends_on('infernal@1.1.2', type='run', when='@2.0.0')
+
+ def patch(self):
+ filter_file('infernal_dir: {bin_dir}',
+ 'infernal_dir: %s' % self.spec['infernal'].prefix.bin,
+ 'tRNAscan-SE.conf.src', string=True)
--
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