From 30694aa501e0b36daac89275a7910fb89f4b1135 Mon Sep 17 00:00:00 2001
From: Justin S <3630356+codeandkey@users.noreply.github.com>
Date: Tue, 14 Jan 2020 17:22:49 -0600
Subject: [PATCH] gapfiller: traverse subdirectories in patch (#14375)
* gapfiller: traverse subdirectories in patch
* gapfiller: revert glob function change
* gapfiller: use more precise glob
---
var/spack/repos/builtin/packages/gapfiller/package.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/var/spack/repos/builtin/packages/gapfiller/package.py b/var/spack/repos/builtin/packages/gapfiller/package.py
index 442658903f..c2fa5b025e 100644
--- a/var/spack/repos/builtin/packages/gapfiller/package.py
+++ b/var/spack/repos/builtin/packages/gapfiller/package.py
@@ -33,7 +33,7 @@ def url_for_version(self, version):
def patch(self):
with working_dir('.'):
- files = glob.iglob("*.pl")
+ files = glob.glob("*.pl") + glob.glob('bwa/*.pl')
for file in files:
change = FileFilter(file)
change.filter('usr/bin/perl', 'usr/bin/env perl')
--
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