From 187dfb61a376172b6d7adb2e2df3884041a4413c Mon Sep 17 00:00:00 2001
From: Justin Stanley <molecuul@users.noreply.github.com>
Date: Fri, 19 Oct 2018 20:01:55 -0500
Subject: [PATCH] new package: trimal (starting at 1.4.1) (#9592)
---
.../repos/builtin/packages/trimal/package.py | 25 +++++++++++++++++++
1 file changed, 25 insertions(+)
create mode 100644 var/spack/repos/builtin/packages/trimal/package.py
diff --git a/var/spack/repos/builtin/packages/trimal/package.py b/var/spack/repos/builtin/packages/trimal/package.py
new file mode 100644
index 0000000000..68d9efc6af
--- /dev/null
+++ b/var/spack/repos/builtin/packages/trimal/package.py
@@ -0,0 +1,25 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Trimal(MakefilePackage):
+ """A tool for automated alignment trimming in large-scale
+ phylogenetic analyses"""
+
+ homepage = "https://github.com/scapella/trimal"
+ url = "https://github.com/scapella/trimal/archive/v1.4.1.tar.gz"
+
+ version('1.4.1', sha256='cb8110ca24433f85c33797b930fa10fe833fa677825103d6e7f81dd7551b9b4e')
+
+ build_directory = 'source'
+
+ def install(self, sinstall_treepec, prefix):
+ mkdirp(prefix.bin)
+ binaries = ['trimal', 'readal', 'statal']
+ with working_dir(self.build_directory):
+ for b in binaries:
+ install(b, prefix.bin)
--
GitLab