From 130a77f3227707377de87675fc4434a2afb903f9 Mon Sep 17 00:00:00 2001
From: Glenn Johnson <glenn-johnson@uiowa.edu>
Date: Thu, 27 Feb 2020 11:51:15 -0600
Subject: [PATCH] New packages: py-pymc3 and py-arviz (#15226)
This PR adds py-pymc3 and py-arviz as a dependency.
---
.../builtin/packages/py-arviz/package.py | 26 +++++++++++++++++
.../builtin/packages/py-pymc3/package.py | 29 +++++++++++++++++++
2 files changed, 55 insertions(+)
create mode 100644 var/spack/repos/builtin/packages/py-arviz/package.py
create mode 100644 var/spack/repos/builtin/packages/py-pymc3/package.py
diff --git a/var/spack/repos/builtin/packages/py-arviz/package.py b/var/spack/repos/builtin/packages/py-arviz/package.py
new file mode 100644
index 0000000000..20e1be3839
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-arviz/package.py
@@ -0,0 +1,26 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PyArviz(PythonPackage):
+ """ArviZ (pronounced "AR-vees") is a Python package for exploratory
+ analysis of Bayesian models. Includes functions for posterior analysis,
+ model checking, comparison and diagnostics."""
+
+ homepage = "http://github.com/arviz-devs/arviz"
+ url = "https://pypi.io/packages/source/a/arviz/arviz-0.6.1.tar.gz"
+
+ version('0.6.1', sha256='435edf8db49c41a8fa198f959e7581063006c49a4efdef4755bb778db6fd4f72')
+
+ depends_on('py-setuptools', type='build')
+ depends_on('py-matplotlib@3.0:', type=('build', 'run'))
+ depends_on('py-numpy@1.12:', type=('build', 'run'))
+ depends_on('py-scipy@0.19:', type=('build', 'run'))
+ depends_on('py-packaging', type=('build', 'run'))
+ depends_on('py-pandas@0.23:', type=('build', 'run'))
+ depends_on('py-xarray@0.11:', type=('build', 'run'))
+ depends_on('py-netcdf4', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/py-pymc3/package.py b/var/spack/repos/builtin/packages/py-pymc3/package.py
new file mode 100644
index 0000000000..5f4fbce9a6
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-pymc3/package.py
@@ -0,0 +1,29 @@
+# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class PyPymc3(PythonPackage):
+ """PyMC3 is a Python package for Bayesian statistical modeling and
+ Probabilistic Machine Learning focusing on advanced Markov chain Monte
+ Carlo (MCMC) and variational inference (VI) algorithms. Its flexibility and
+ extensibility make it applicable to a large suite of problems."""
+
+ homepage = "http://github.com/pymc-devs/pymc3"
+ url = "https://pypi.io/packages/source/p/pymc3/pymc3-3.8.tar.gz"
+
+ version('3.8', sha256='1bb2915e4a29877c681ead13932b0b7d276f7f496e9c3f09ba96b977c99caf00')
+
+ depends_on('python@3.5.4:', type=('build', 'run'))
+ depends_on('py-setuptools', type='build')
+ depends_on('py-arviz@0.4.1:', type=('build', 'run'))
+ depends_on('py-theano@1.0.4:', type=('build', 'run'))
+ depends_on('py-numpy@1.13.0:', type=('build', 'run'))
+ depends_on('py-scipy@0.18.1:', type=('build', 'run'))
+ depends_on('py-pandas@0.18.0:', type=('build', 'run'))
+ depends_on('py-patsy@0.4.0:', type=('build', 'run'))
+ depends_on('py-tqdm@4.8.4:', type=('build', 'run'))
+ depends_on('py-h5py@2.7.0:', type=('build', 'run'))
--
GitLab