Need jug-run executable to launch full reconstruction
I propose to have jug-run
set LD_LIBRARY_PATH
and PYTHONPATH
based on its install prefix, which will make it easier to work with different prefixes (just make sure you have the desired jug-run in your PATH, or call it directly).
jug-run will also be the place where we can pass input and output files in a more elegant way beyond using environment variables (later upgrade)