From 5954cf2436a390c996083d27d0412c48ae4a2751 Mon Sep 17 00:00:00 2001
From: Sylvester Joosten <sjoosten@anl.gov>
Date: Mon, 26 Jul 2021 18:17:43 +0000
Subject: [PATCH] removed unnecessary includes of DataObjectHandleBase

---
 .../deprecated/calorimeter_clustering.py      | 121 ----------
 .../options/deprecated/full_cal_clusters.py   | 208 ------------------
 .../options/deprecated/full_cal_digi.py       | 193 ----------------
 .../options/deprecated/hcal_clustering.py     | 130 -----------
 .../clustering/options/full_cal_reco.py       |   1 -
 .../options/full_trackpluscalo_reco.py        |   1 -
 benchmarks/ecal/options/barrel.py             |   1 -
 .../deprecated/crystal_calorimeter_reco.py    |  86 --------
 .../options/deprecated/emcal_barrel_reco.py   | 126 -----------
 .../options/deprecated/example_crystal.py     |  42 ----
 .../deprecated/full_em_calorimeter_reco.py    | 111 ----------
 benchmarks/ecal/options/endcap_e.py           |   1 -
 benchmarks/ecal/options/endcap_i.py           |   1 -
 .../full/options/full_reconstruction.py       |   1 -
 .../imaging_ecal/options/hybrid_cluster.py    |   1 -
 .../imaging_ecal/options/imaging_2dcluster.py |   1 -
 .../options/imaging_topocluster.py            |   1 -
 .../imaging_ecal/options/scfi_cluster.py      |   1 -
 .../options/imaging_ml_data.py                |   1 -
 benchmarks/rich/options/rich_reco.py          |   1 -
 .../options/tracker_reconstruction.py         |   3 +-
 .../tracking/options/truth_seeded_tracking.py |   1 -
 22 files changed, 1 insertion(+), 1032 deletions(-)
 delete mode 100644 benchmarks/clustering/options/deprecated/calorimeter_clustering.py
 delete mode 100644 benchmarks/clustering/options/deprecated/full_cal_clusters.py
 delete mode 100644 benchmarks/clustering/options/deprecated/full_cal_digi.py
 delete mode 100644 benchmarks/clustering/options/deprecated/hcal_clustering.py
 delete mode 100644 benchmarks/ecal/options/deprecated/crystal_calorimeter_reco.py
 delete mode 100644 benchmarks/ecal/options/deprecated/emcal_barrel_reco.py
 delete mode 100644 benchmarks/ecal/options/deprecated/example_crystal.py
 delete mode 100644 benchmarks/ecal/options/deprecated/full_em_calorimeter_reco.py

diff --git a/benchmarks/clustering/options/deprecated/calorimeter_clustering.py b/benchmarks/clustering/options/deprecated/calorimeter_clustering.py
deleted file mode 100644
index d4431f16..00000000
--- a/benchmarks/clustering/options/deprecated/calorimeter_clustering.py
+++ /dev/null
@@ -1,121 +0,0 @@
-from Gaudi.Configuration import *
-import os
-  
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
-from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
-from GaudiKernel import SystemOfUnits as units
-
-detector_name = "topside"
-if "JUGGLER_DETECTOR" in os.environ :
-  detector_name = str(os.environ["JUGGLER_DETECTOR"])
-
-if "JUGGLER_DETECTOR_PATH" in os.environ :
-  detector_name = str(os.environ["JUGGLER_DETECTOR_PATH"]) + "/" + detector_name
-
-# get sampling fraction from system environment variable, 1.0 by default
-sf = 1.0
-if "CB_EMCAL_SAMP_FRAC" in os.environ :
-  sf = str(os.environ["CB_EMCAL_SAMP_FRAC"])
-
-# todo add checks
-input_sim_file  = str(os.environ["JUGGLER_SIM_FILE"])
-output_rec_file = str(os.environ["JUGGLER_REC_FILE"])
-n_events = str(os.environ["JUGGLER_N_EVENTS"])
-
-geo_service  = GeoSvc("GeoSvc", detectors=["{}.xml".format(detector_name)], OutputLevel=INFO)
-podioevent   = EICDataSvc("EventDataSvc", inputs=[input_sim_file])
-
-from Configurables import PodioInput
-from Configurables import Jug__Base__InputCopier_dd4pod__Geant4ParticleCollection_dd4pod__Geant4ParticleCollection_ as MCCopier
-from Configurables import Jug__Base__InputCopier_dd4pod__CalorimeterHitCollection_dd4pod__CalorimeterHitCollection_ as CalCopier
-
-from Configurables import Jug__Digi__HadronicCalDigi as HadCalorimeterDigi
-from Configurables import Jug__Digi__EMCalorimeterDigi as EMCalorimeterDigi
-from Configurables import Jug__Digi__CrystalEndcapsDigi as CrystalEndcapsDigi
-
-from Configurables import Jug__Reco__CrystalEndcapsReco as CrystalEndcapsReco
-from Configurables import Jug__Reco__EMCalReconstruction as EMCalReconstruction
-
-from Configurables import Jug__Reco__SimpleClustering as SimpleClustering
-from Configurables import Jug__Reco__CalorimeterIslandCluster as IslandCluster
-from Configurables import Jug__Reco__ClusterRecoCoG as RecoCoG
-
-podioinput = PodioInput("PodioReader", collections=["mcparticles","CrystalEcalHits","EcalBarrelHits"], OutputLevel=DEBUG)
-
-## copiers to get around input --> output copy bug. Note the "2" appended to the output collection.
-copier = MCCopier("MCCopier", 
-        inputCollection="mcparticles", 
-        outputCollection="mcparticles2") 
-calcopier = CalCopier("CalCopier", 
-        inputCollection="CrystalEcalHits", 
-        outputCollection="CrystalEcalHits2") 
-
-emcaldigi = CrystalEndcapsDigi("ecal_digi",
-        inputHitCollection="CrystalEcalHits", 
-        outputHitCollection="RawDigiEcalHits")
-ecdigi = EMCalorimeterDigi("ec_barrel_digi", 
-        inputHitCollection="EcalBarrelHits", 
-        outputHitCollection="RawEcalBarrelHits")
-
-crystal_ec_reco = CrystalEndcapsReco("crystal_ec_reco", 
-        inputHitCollection="RawDigiEcalHits", 
-        outputHitCollection="RecoEcalHits",
-        minModuleEdep=1.0*units.MeV)
-
-ecal_reco = EMCalReconstruction("ecal_reco", 
-        inputHitCollection="RawEcalBarrelHits", 
-        outputHitCollection="RecEcalBarrelHits",
-        samplingFraction=0.25,
-        minModuleEdep=0.0*units.MeV)
-
-ec_barrel_cluster = IslandCluster("ec_barrel_cluster", 
-        inputHitCollection="RecEcalBarrelHits", 
-        outputClusterCollection="EcalBarrelProtoClusters",
-        splitHitCollection="splitEcalBarrelHitCollection",
-        minClusterCenterEdep=1*units.MeV, 
-        groupRange=2.0,
-        OutputLevel=DEBUG)
-
-crystal_ec_cluster = IslandCluster("crystal_ec_cluster", 
-        inputHitCollection="RecoEcalHits", 
-        outputClusterCollection="EcalProtoClusters",
-        splitHitCollection="splitEcalHitCollection",
-        minClusterCenterEdep=30*units.MeV, 
-        groupRange=2.0,
-        OutputLevel=DEBUG)
-
-simple_cluster = SimpleClustering("simple_cluster", 
-        inputHitCollection="RecEcalBarrelHits", 
-        outputClusters="SimpleClusters",
-        OutputLevel=DEBUG)
-
-ec_barrel_clusterreco = RecoCoG("ec_barrel_clusterreco",
-        inputClusterCollection="EcalBarrelProtoClusters", 
-        outputClusterCollection="EcalBarrelClusters", 
-        logWeightBase=6.2,
-        samplingFraction=sf) 
-
-clusterreco = RecoCoG("cluster_reco", 
-        inputClusterCollection="EcalProtoClusters", 
-        outputClusterCollection="EcalClusters", 
-        logWeightBase=4.2, 
-        moduleDimZName="CrystalBox_z_length",
-        samplingFraction=sf, 
-        OutputLevel=DEBUG)
-
-out = PodioOutput("out", filename=output_rec_file)
-
-out.outputCommands = ["keep *"]
-
-ApplicationMgr(
-    TopAlg = [podioinput, copier, calcopier,
-              ecdigi, emcaldigi, 
-              crystal_ec_reco, ecal_reco, 
-              ec_barrel_cluster, crystal_ec_cluster, ec_barrel_clusterreco, clusterreco,
-              simple_cluster,
-              out],
-    EvtSel = 'NONE',
-    EvtMax   = n_events,
-    ExtSvc = [podioevent],
-    OutputLevel=DEBUG
- )
diff --git a/benchmarks/clustering/options/deprecated/full_cal_clusters.py b/benchmarks/clustering/options/deprecated/full_cal_clusters.py
deleted file mode 100644
index c0918e01..00000000
--- a/benchmarks/clustering/options/deprecated/full_cal_clusters.py
+++ /dev/null
@@ -1,208 +0,0 @@
-'''
-    An example script to cluster reconstructed calorimeter hits
-'''
-
-from Gaudi.Configuration import *
-import os
-import ROOT
-
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
-from Configurables import ApplicationMgr, EICDataSvc, PodioInput, PodioOutput, GeoSvc
-from GaudiKernel.SystemOfUnits import MeV, GeV, mm, cm, mrad
-
-detector_name = str(os.environ.get("JUGGLER_DETECTOR", "athena"))
-detector_path = str(os.environ.get("JUGGLER_DETECTOR_PATH", "."))
-compact_path = os.path.join(detector_path, detector_name)
-
-# get sampling fractions from system environment variable, 1.0 by default
-ce_ecal_sf = float(os.environ.get("CE_ECAL_SAMP_FRAC", 0.253))
-cb_ecal_sf = float(os.environ.get("CB_ECAL_SAMP_FRAC", 0.01324))
-cb_hcal_sf = float(os.environ.get("CB_HCAL_SAMP_FRAC", 0.038))
-ci_hcal_sf = float(os.environ.get("CI_HCAL_SAMP_FRAC", 0.025))
-ce_hcal_sf = float(os.environ.get("CE_HCAL_SAMP_FRAC", 0.025))
-
-# input and output
-input_digis = [f.strip() for f in str.split(os.environ["JUGGLER_DIGI_FILE"], ",") if f.strip()]
-output_rec = str(os.environ["JUGGLER_REC_FILE"])
-n_events = int(os.environ["JUGGLER_N_EVENTS"])
-
-# geometry service
-geo_service = GeoSvc("GeoSvc", detectors=["{}.xml".format(compact_path)], OutputLevel=INFO)
-# data service
-podioevent = EICDataSvc("EventDataSvc", inputs=input_digis)
-
-
-# juggler components
-from Configurables import Jug__Base__InputCopier_dd4pod__Geant4ParticleCollection_dd4pod__Geant4ParticleCollection_ as MCCopier
-from Configurables import Jug__Digi__CalorimeterHitDigi as CalHitDigi
-from Configurables import Jug__Reco__CalorimeterHitReco as CalHitReco
-from Configurables import Jug__Reco__CalorimeterHitsMerger as CalHitsMerger
-from Configurables import Jug__Reco__CalorimeterIslandCluster as IslandCluster
-
-from Configurables import Jug__Reco__ImagingPixelReco as ImCalPixelReco
-from Configurables import Jug__Reco__ImagingTopoCluster as ImagingCluster
-
-from Configurables import Jug__Reco__ClusterRecoCoG as RecoCoG
-from Configurables import Jug__Reco__ImagingClusterReco as ImagingClusterReco
-
-# branches needed from simulation root file
-digi_coll = [
-#    "mcparticles2",
-    "EcalEndcapNHitsReco",
-    "EcalEndcapPHitsReco",
-    "EcalBarrelHitsReco",
-    "HcalBarrelHitsReco",
-    "HcalHadronEndcapHitsReco",
-    "HcalElectronEndcapHitsReco",
-]
-
-# input and output
-podin = PodioInput("PodioReader", collections=digi_coll, OutputLevel=DEBUG)
-podout = PodioOutput("out", filename=output_rec)
-# copier needed to get around input --> output copy bug. So truth (mcparticles) can be saved in output file
-# copier = MCCopier("MCCopier", inputCollection="mcparticles2", outputCollection="mcparticles3")
-
-
-# Crystal Endcap Ecal
-ce_ecal_cl = IslandCluster("ce_ecal_cl",
-        # OutputLevel=DEBUG,
-        inputHitCollection="EcalEndcapNHitsReco",
-        outputClusterCollection="EcalEndcapNProtoClusters",
-        splitHitCollection="EcalEndcapNHitsSplit",
-        splitCluster=False,
-        minClusterCenterEdep=30*MeV,
-        groupRanges=[2.2*cm, 2.2*cm])
-
-ce_ecal_clreco = RecoCoG("ce_ecal_clreco",
-        inputClusterCollection="EcalEndcapNProtoClusters", 
-        outputClusterCollection="EcalEndcapNClusters", 
-        samplingFraction=0.998,      # this accounts for a small fraction of leakage
-        logWeightBase=4.6)
-
-
-# Endcap Sampling Ecal
-# merge hits in different layer (projection to local x-y plane)
-ci_ecal_merger = CalHitsMerger("ci_ecal_merger",
-        inputHitCollection="EcalEndcapPHitsReco",
-        outputHitCollection="EcalEndcapPHitsRecoXY",
-        fields=["layer", "slice"],
-        fieldRefNumbers=[1, 0],
-        readoutClass="EcalEndcapPHits")
-
-ci_ecal_cl = IslandCluster("ci_ecal_cl",
-        inputHitCollection="EcalEndcapPHitsRecoXY",
-        outputClusterCollection="EcalEndcapPProtoClusters",
-        splitHitCollection="EcalEndcapPHitsSplit",
-        splitCluster=False,
-        minClusterCenterEdep=30.*MeV,
-        groupRanges=[5*mm, 5*mm])
-
-ci_ecal_clreco = RecoCoG("ci_ecal_clreco",
-        inputClusterCollection="EcalEndcapPProtoClusters", 
-        outputClusterCollection="EcalEndcapPClusters", 
-        logWeightBase=6.2,
-        samplingFraction=ce_ecal_sf)
-
-
-# Central Barrel Ecal (Imaging Cal.)
-cb_ecal_cl = ImagingCluster("cb_ecal_cl",
-        inputHitCollection="EcalBarrelHitsReco",
-        outputClusterCollection="EcalBarrelProtoClusters",
-        outputHitCollection="EcalBarrelClusterHits",
-        localRanges=[2.*mm, 2*mm],              # same layer
-        adjLayerRanges=[10*mrad, 10*mrad],      # adjacent layer
-        adjLayerDiff=2,                         # id diff for adjacent layer
-        adjSectorDist=3.*cm)                    # different sector
-cb_ecal_clreco = ImagingClusterReco("cb_ecal_clreco",
-        samplingFraction=cb_ecal_sf,
-        inputClusterCollection="EcalBarrelProtoClusters",
-        outputClusterCollection="EcalBarrelClusters",
-        outputLayerCollection="EcalBarrelLayers")
-
-
-# Central Barrel Hcal
-# merge hits in different layer (projection to local x-y plane)
-cb_hcal_merger = CalHitsMerger("cb_hcal_merger",
-        inputHitCollection="HcalBarrelHitsReco",
-        outputHitCollection="HcalBarrelHitsRecoXY",
-        readoutClass="HcalBarrelHits",
-        fields=["layer", "slice"],
-        fieldRefNumbers=[1, 0])
-
-cb_hcal_cl = IslandCluster("cb_hcal_cl",
-        inputHitCollection="HcalBarrelHitsRecoXY",
-        outputClusterCollection="HcalBarrelProtoClusters",
-        splitHitCollection="HcalBarrelHitsSplit",
-        splitCluster=False,
-        minClusterCenterEdep=30.*MeV,
-        groupRanges=[15.*cm, 15.*cm])
-
-cb_hcal_clreco = RecoCoG("cb_hcal_clreco",
-        inputClusterCollection="HcalBarrelProtoClusters", 
-        outputClusterCollection="HcalBarrelClusters", 
-        logWeightBase=6.2,
-        samplingFraction=cb_hcal_sf)
-
-
-# Hcal Hadron Endcap HCal
-ci_hcal_merger = CalHitsMerger("ci_hcal_merger",
-        inputHitCollection="HcalHadronEndcapHitsReco",
-        outputHitCollection="HcalHadronEndcapHitsRecoXY",
-        readoutClass="HcalHadronEndcapHits",
-        fields=["layer", "slice"],
-        fieldRefNumbers=[1, 0])
-
-ci_hcal_cl = IslandCluster("ci_hcal_cl",
-        inputHitCollection="HcalHadronEndcapHitsRecoXY",
-        outputClusterCollection="HcalHadronEndcapProtoClusters",
-        splitHitCollection="HcalHadronEndcapHitsSplit",
-        splitCluster=False,
-        minClusterCenterEdep=30.*MeV,
-        groupRanges=[15.*cm, 15.*cm])
-
-ci_hcal_clreco = RecoCoG("ci_hcal_clreco",
-        inputClusterCollection="HcalHadronEndcapProtoClusters", 
-        outputClusterCollection="HcalHadronEndcapClusters", 
-        logWeightBase=6.2,
-        samplingFraction=ci_hcal_sf)
-
-# Hcal Electron Endcap
-ce_hcal_merger = CalHitsMerger("ce_hcal_merger",
-        inputHitCollection="HcalElectronEndcapHitsReco",
-        outputHitCollection="HcalElectronEndcapHitsRecoXY",
-        readoutClass="HcalElectronEndcapHits",
-        fields=["layer", "slice"],
-        fieldRefNumbers=[1, 0])
-
-ce_hcal_cl = IslandCluster("ce_hcal_cl",
-        inputHitCollection="HcalElectronEndcapHitsRecoXY",
-        outputClusterCollection="HcalElectronEndcapProtoClusters",
-        splitHitCollection="HcalElectronEndcapHitsSplit",
-        splitCluster=False,
-        minClusterCenterEdep=30.*MeV,
-        groupRanges=[15.*cm, 15.*cm])
-
-ce_hcal_clreco = RecoCoG("ce_hcal_clreco",
-        inputClusterCollection="HcalElectronEndcapProtoClusters", 
-        outputClusterCollection="HcalElectronEndcapClusters", 
-        logWeightBase=6.2,
-        samplingFraction=ce_hcal_sf)
-
-
-podout.outputCommands = ["drop *", "keep mcparticles", "keep *Clusters", "keep *Layers"]
-
-ApplicationMgr(
-    TopAlg = [podin, # copier,
-              ce_ecal_cl, ce_ecal_clreco,
-              ci_ecal_merger, ci_ecal_cl, ci_ecal_clreco,
-              cb_ecal_cl, cb_ecal_clreco,
-              cb_hcal_merger, cb_hcal_cl, cb_hcal_clreco,
-              ce_hcal_merger, ce_hcal_cl, ce_hcal_clreco,
-              ci_hcal_merger, ci_hcal_cl, ci_hcal_clreco,
-              podout],
-    EvtSel = 'NONE',
-    EvtMax   = n_events,
-    ExtSvc = [podioevent],
-    OutputLevel=DEBUG
-)
-
diff --git a/benchmarks/clustering/options/deprecated/full_cal_digi.py b/benchmarks/clustering/options/deprecated/full_cal_digi.py
deleted file mode 100644
index 347e14e2..00000000
--- a/benchmarks/clustering/options/deprecated/full_cal_digi.py
+++ /dev/null
@@ -1,193 +0,0 @@
-'''
-    An example script to digitize/reconstruct calorimeter hits
-'''
-from Gaudi.Configuration import *
-import os
-import ROOT
-
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
-from Configurables import ApplicationMgr, EICDataSvc, PodioInput, PodioOutput, GeoSvc
-from GaudiKernel.SystemOfUnits import MeV, GeV, mm, cm, mrad
-
-detector_name = str(os.environ.get("JUGGLER_DETECTOR", "athena"))
-detector_path = str(os.environ.get("JUGGLER_DETECTOR_PATH", "."))
-compact_path = os.path.join(detector_path, detector_name)
-
-# input and output
-input_sims = [f.strip() for f in str.split(os.environ["JUGGLER_SIM_FILE"], ",") if f.strip()]
-output_rec = str(os.environ["JUGGLER_DIGI_FILE"])
-n_events = int(os.environ["JUGGLER_N_EVENTS"])
-
-# geometry service
-geo_service = GeoSvc("GeoSvc", detectors=["{}.xml".format(compact_path)], OutputLevel=INFO)
-# data service
-podioevent = EICDataSvc("EventDataSvc", inputs=input_sims)
-
-
-# juggler components
-from Configurables import Jug__Base__InputCopier_dd4pod__Geant4ParticleCollection_dd4pod__Geant4ParticleCollection_ as MCCopier
-from Configurables import Jug__Digi__CalorimeterHitDigi as CalHitDigi
-from Configurables import Jug__Reco__CalorimeterHitReco as CalHitReco
-from Configurables import Jug__Reco__CalorimeterHitsMerger as CalHitsMerger
-from Configurables import Jug__Reco__CalorimeterIslandCluster as IslandCluster
-
-from Configurables import Jug__Reco__ImagingPixelReco as ImCalPixelReco
-from Configurables import Jug__Reco__ImagingTopoCluster as ImagingCluster
-
-from Configurables import Jug__Reco__ClusterRecoCoG as RecoCoG
-from Configurables import Jug__Reco__ImagingClusterReco as ImagingClusterReco
-
-# branches needed from simulation root file
-sim_coll = [
-    "mcparticles",
-    "EcalEndcapNHits",
-    "EcalEndcapPHits",
-    "EcalBarrelHits",
-    "HcalBarrelHits",
-    "HcalHadronEndcapHits",
-    "HcalElectronEndcapHits",
-]
-
-# input and output
-podin = PodioInput("PodioReader", collections=sim_coll)
-podout = PodioOutput("out", filename=output_rec)
-# copier needed to get around input --> output copy bug. So truth (mcparticles) can be saved in output file
-copier = MCCopier("MCCopier", inputCollection="mcparticles", outputCollection="mcparticles2")
-
-
-# Crystal Endcap Ecal
-ce_ecal_digi = CalHitDigi("ce_ecal_digi",
-        inputHitCollection="EcalEndcapNHits",
-        outputHitCollection="EcalEndcapNHitsDigi",
-        energyResolutions=[0., 0.02, 0.],
-        dynamicRangeADC=5.*GeV,     # digi settings must match with reco
-        capacityADC=32768,
-        pedestalMean=400,
-        pedestalSigma=3)
-
-ce_ecal_reco = CalHitReco("ce_ecal_reco",
-        inputHitCollection="EcalEndcapNHitsDigi",
-        outputHitCollection="EcalEndcapNHitsReco",
-        dynamicRangeADC=5.*GeV,
-        capacityADC=32768,
-        pedestalMean=400,
-        pedestalSigma=3,
-        thresholdFactor=4,          # 4 sigma
-        minimumHitEdep=1.0*MeV,     # discard low energy hits
-        readoutClass="EcalEndcapNHits",
-        sectorField="sector")
-
-# Endcap Sampling Ecal
-ci_ecal_digi = CalHitDigi("ci_ecal_digi",
-         inputHitCollection="EcalEndcapPHits",
-         outputHitCollection="EcalEndcapPHitsDigi",
-         dynamicRangeADC=50.*MeV,
-         capacityADC=32768,
-         pedestalMean=400,
-         pedestalSigma=10)
-
-ci_ecal_reco = CalHitReco("ci_ecal_reco",
-        inputHitCollection="EcalEndcapPHitsDigi",
-        outputHitCollection="EcalEndcapPHitsReco",
-        dynamicRangeADC=50.*MeV,
-        capacityADC=32768,
-        pedestalMean=400,
-        pedestalSigma=10,
-        thresholdFactor=5.0)
-
-# Central Barrel Ecal (Imaging Cal.)
-cb_ecal_digi = CalHitDigi("cb_ecal_digi",
-        inputHitCollection="EcalBarrelHits",
-        outputHitCollection="EcalBarrelHitsDigi",
-        energyResolutions=[0., 0.02, 0.],   # 2% flat resolution
-        dynamicRangeADC=3*MeV,
-        capacityADC=8192,
-        pedestalMean=400,
-        pedestalSigma=20)   # about 6 keV
-cb_ecal_reco = ImCalPixelReco("cb_ecal_reco",
-        inputHitCollection="EcalBarrelHitsDigi",
-        outputHitCollection="EcalBarrelHitsReco",
-        dynamicRangeADC=3.*MeV,
-        capacityADC=8192,
-        pedestalMean=400,
-        pedestalSigma=20,
-        thresholdFactor=3,  # about 20 keV
-        readoutClass="EcalBarrelHits",  # readout class
-        layerField="layer",             # field to get layer id
-        sectorField="module")           # field to get sector id
-
-# Central Barrel Hcal
-cb_hcal_digi = CalHitDigi("cb_hcal_digi",
-         inputHitCollection="HcalBarrelHits",
-         outputHitCollection="HcalBarrelHitsDigi",
-         dynamicRangeADC=50.*MeV,
-         capacityADC=32768,
-         pedestalMean=400,
-         pedestalSigma=10)
-
-cb_hcal_reco = CalHitReco("cb_hcal_reco",
-        inputHitCollection="HcalBarrelHitsDigi",
-        outputHitCollection="HcalBarrelHitsReco",
-        dynamicRangeADC=50.*MeV,
-        capacityADC=32768,
-        pedestalMean=400,
-        pedestalSigma=10,
-        thresholdFactor=5.0,
-        readoutClass="HcalBarrelHits",
-        layerField="layer",
-        sectorField="module")
-
-# Hcal Hadron Endcap
-ci_hcal_digi = CalHitDigi("ci_hcal_digi",
-         inputHitCollection="HcalHadronEndcapHits",
-         outputHitCollection="HcalHadronEndcapHitsDigi",
-         dynamicRangeADC=50.*MeV,
-         capacityADC=32768,
-         pedestalMean=400,
-         pedestalSigma=10)
-
-ci_hcal_reco = CalHitReco("ci_hcal_reco",
-        inputHitCollection="HcalHadronEndcapHitsDigi",
-        outputHitCollection="HcalHadronEndcapHitsReco",
-        dynamicRangeADC=50.*MeV,
-        capacityADC=32768,
-        pedestalMean=400,
-        pedestalSigma=10,
-        thresholdFactor=5.0)
-
-# Hcal Electron Endcap
-ce_hcal_digi = CalHitDigi("ce_hcal_digi",
-        inputHitCollection="HcalElectronEndcapHits",
-        outputHitCollection="HcalElectronEndcapHitsDigi",
-        dynamicRangeADC=50.*MeV,
-        capacityADC=32768,
-        pedestalMean=400,
-        pedestalSigma=10)
-
-ce_hcal_reco = CalHitReco("ce_hcal_reco",
-        inputHitCollection="HcalElectronEndcapHitsDigi",
-        outputHitCollection="HcalElectronEndcapHitsReco",
-        dynamicRangeADC=50.*MeV,
-        capacityADC=32768,
-        pedestalMean=400,
-        pedestalSigma=10,
-        thresholdFactor=5.0)
-
-
-podout.outputCommands = ['drop *', 'keep mcparticles2', 'keep *Reco', 'keep *Digi']
-
-ApplicationMgr(
-    TopAlg = [podin, copier,
-              ce_ecal_digi, ce_ecal_reco,
-              ci_ecal_digi, ci_ecal_reco,
-              cb_ecal_digi, cb_ecal_reco,
-              cb_hcal_digi, cb_hcal_reco,
-              ce_hcal_digi, ce_hcal_reco,
-              ci_hcal_digi, ci_hcal_reco,
-              podout],
-    EvtSel = 'NONE',
-    EvtMax   = n_events,
-    ExtSvc = [podioevent],
-    OutputLevel=DEBUG
-)
-
diff --git a/benchmarks/clustering/options/deprecated/hcal_clustering.py b/benchmarks/clustering/options/deprecated/hcal_clustering.py
deleted file mode 100644
index 986c976a..00000000
--- a/benchmarks/clustering/options/deprecated/hcal_clustering.py
+++ /dev/null
@@ -1,130 +0,0 @@
-from Gaudi.Configuration import *
-import os
-  
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
-from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
-from GaudiKernel import SystemOfUnits as units
-
-detector_name = "topside"
-if "JUGGLER_DETECTOR" in os.environ :
-  detector_name = str(os.environ["JUGGLER_DETECTOR"])
-
-if "JUGGLER_DETECTOR_PATH" in os.environ :
-  detector_name = str(os.environ["JUGGLER_DETECTOR_PATH"]) + "/" + detector_name
-
-# get sampling fraction from system environment variable, 1.0 by default
-sf = 1.0
-if "CB_EMCAL_SAMP_FRAC" in os.environ :
-  sf = str(os.environ["CB_EMCAL_SAMP_FRAC"])
-
-# todo add checks
-input_sim_file  = str(os.environ["JUGGLER_SIM_FILE"])
-output_rec_file = str(os.environ["JUGGLER_REC_FILE"])
-n_events = str(os.environ["JUGGLER_N_EVENTS"])
-
-geo_service  = GeoSvc("GeoSvc", detectors=["{}.xml".format(detector_name)])
-podioevent   = EICDataSvc("EventDataSvc", inputs=[input_sim_file])
-
-from Configurables import PodioInput
-from Configurables import Jug__Base__InputCopier_dd4pod__Geant4ParticleCollection_dd4pod__Geant4ParticleCollection_ as MCCopier
-from Configurables import Jug__Base__InputCopier_dd4pod__CalorimeterHitCollection_dd4pod__CalorimeterHitCollection_ as CalCopier
-
-# from Configurables import Jug__Digi__HadronicCalDigi as HadCalorimeterDigi
-from Configurables import Jug__Digi__CalorimeterHitDigi as HadCalorimeterDigi
-from Configurables import Jug__Digi__EMCalorimeterDigi as EMCalorimeterDigi
-from Configurables import Jug__Digi__CrystalEndcapsDigi as CrystalEndcapsDigi
-
-from Configurables import Jug__Reco__CrystalEndcapsReco as CrystalEndcapsReco
-from Configurables import Jug__Reco__EMCalReconstruction as EMCalReconstruction
-# from Configurables import Jug__Reco__HCalReconstruction as HCalReconstruction
-from Configurables import Jug__Reco__EcalTungstenSamplingReco as HCalReconstruction
-from Configurables import Jug__Reco__CalorimeterHitsMerger as CalorimeterHitsMerger
-
-# from Configurables import Jug__Reco__SimpleClustering as SimpleClustering
-from Configurables import Jug__Reco__TopologicalCellCluster as TopoCluster
-from Configurables import Jug__Reco__CalorimeterIslandCluster as IslandCluster
-from Configurables import Jug__Reco__ClusterRecoCoG as RecoCoG
-
-podioinput = PodioInput("PodioReader", collections=["mcparticles","HcalBarrelHits"], OutputLevel=DEBUG)
-
-## copiers to get around input --> output copy bug. Note the "2" appended to the output collection.
-copier = MCCopier("MCCopier", 
-        inputCollection="mcparticles", 
-        outputCollection="mcparticles2") 
-
-##raw hits
-
-
-calcopier = CalCopier("CalCopier", 
-        inputCollection="HcalBarrelHits", 
-        outputCollection="HcalBarrelHits2") 
-
-#digitized hits
-
-hcaldigi = HadCalorimeterDigi("hcal_barrel_digi",
-         inputHitCollection="HcalBarrelHits",
-         outputHitCollection="RawHcalBarrelHits",
-         inputEnergyUnit=units.GeV,
-         inputTimeUnit=units.ns,
-         energyResolutions=[0.0, 0., 0.],
-         dynamicRangeADC=50.*units.MeV,
-         capacityADC=32768,
-         pedestalMean=400,
-         pedestalSigma=10,
-         OutputLevel=DEBUG                     
-         )
-
-#reconstructed hits
-
-hcal_reco = HCalReconstruction("hcal_reco",
-        inputHitCollection="RawHcalBarrelHits",
-        outputHitCollection="RecHcalBarrelHits",
-        dynamicRangeADC=50.*units.MeV,
-        capacityADC=32768,
-        pedestalMean=400,
-        pedestalSigma=10,
-        thresholdFactor=5.0,
-        OutputLevel=DEBUG)
-
-#clusters
-xymerger = CalorimeterHitsMerger("hcal_xy_merger",                            # 
-          fields=["layer", "slice"],
-          fieldRefNumbers=[0,0],
-          inputHitCollection="RecHcalBarrelHits",
-          outputHitCollection="RecHcalBarrelHitsXY",
-          OutputLevel=DEBUG)                       
-          
-
-hcal_barrel_cluster = IslandCluster("hcal_barrel_cluster", 
-        inputHitCollection="RecHcalBarrelHits", 
-        outputClusterCollection="HcalBarrelClusters",
-        minClusterCenterEdep=30*units.MeV, 
-        groupRange=2.0,
-        OutputLevel=DEBUG)
-
-
-# finalizing clustering (center-of-gravity step)
-
-hcal_barrel_clusterreco = RecoCoG("hcal_barrel_clusterreco",
-        clusterCollection="HcalBarrelClusters", 
-        logWeightBase=6.2,
-        samplingFraction=sf,
-        OutputLevel=DEBUG) 
-
-out = PodioOutput("out", filename=output_rec_file)
-
-out.outputCommands = ["keep *"]
-
-ApplicationMgr(
-    TopAlg = [podioinput, copier, calcopier,
-              hcaldigi,
-              hcal_reco,
-              xymerger,
-              hcal_barrel_cluster,
-              hcal_barrel_clusterreco,
-              out],
-    EvtSel = 'NONE',
-    EvtMax   = n_events,
-    ExtSvc = [podioevent],
-    OutputLevel=DEBUG
- )
diff --git a/benchmarks/clustering/options/full_cal_reco.py b/benchmarks/clustering/options/full_cal_reco.py
index 6e1d3691..402bc11e 100644
--- a/benchmarks/clustering/options/full_cal_reco.py
+++ b/benchmarks/clustering/options/full_cal_reco.py
@@ -5,7 +5,6 @@ from Gaudi.Configuration import *
 import os
 import ROOT
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioInput, PodioOutput, GeoSvc
 from GaudiKernel.SystemOfUnits import MeV, GeV, mm, cm, mrad
 
diff --git a/benchmarks/clustering/options/full_trackpluscalo_reco.py b/benchmarks/clustering/options/full_trackpluscalo_reco.py
index fc016724..1c1c77cf 100644
--- a/benchmarks/clustering/options/full_trackpluscalo_reco.py
+++ b/benchmarks/clustering/options/full_trackpluscalo_reco.py
@@ -5,7 +5,6 @@ from Gaudi.Configuration import *
 import os
 import ROOT
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioInput, PodioOutput, GeoSvc
 from GaudiKernel.SystemOfUnits import MeV, GeV, mm, cm, mrad
 
diff --git a/benchmarks/ecal/options/barrel.py b/benchmarks/ecal/options/barrel.py
index c71d5775..e2df5b3b 100644
--- a/benchmarks/ecal/options/barrel.py
+++ b/benchmarks/ecal/options/barrel.py
@@ -5,7 +5,6 @@ from Gaudi.Configuration import *
 import os
 import ROOT
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioInput, PodioOutput, GeoSvc
 from GaudiKernel.SystemOfUnits import MeV, GeV, mm, cm, mrad
 
diff --git a/benchmarks/ecal/options/deprecated/crystal_calorimeter_reco.py b/benchmarks/ecal/options/deprecated/crystal_calorimeter_reco.py
deleted file mode 100644
index 30b563d5..00000000
--- a/benchmarks/ecal/options/deprecated/crystal_calorimeter_reco.py
+++ /dev/null
@@ -1,86 +0,0 @@
-from Gaudi.Configuration import *
-import os
-  
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
-from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
-from GaudiKernel import SystemOfUnits as units
-
-detector_name = "topside"
-if "JUGGLER_DETECTOR" in os.environ :
-  detector_name = str(os.environ["JUGGLER_DETECTOR"])
-
-detector_path = "topside"
-if "JUGGLER_DETECTOR_PATH" in os.environ :
-  detector_path = str(os.environ["JUGGLER_DETECTOR_PATH"]) 
-
-# todo add checks
-input_sim_file = "jug_input.root"
-if "JUGGLER_SIM_FILE" in os.environ :
-  input_sim_file  = str(os.environ["JUGGLER_SIM_FILE"])
-else :
-    print(" ERROR : JUGGLER_SIM_FILE not set" )
-
-output_rec_file = "jug_rec.root"
-if "JUGGLER_REC_FILE" in os.environ :
-  output_rec_file = str(os.environ["JUGGLER_REC_FILE"])
-else :
-    print(" ERROR : JUGGLER_REC_FILE not set" )
-
-
-n_events = 100
-if "JUGGLER_N_EVENTS" in os.environ :
-  n_events = str(os.environ["JUGGLER_N_EVENTS"])
-
-geo_service  = GeoSvc("GeoSvc", detectors=["{}/{}.xml".format(detector_path,detector_name)], OutputLevel=INFO)
-podioevent   = EICDataSvc("EventDataSvc", inputs=[input_sim_file], OutputLevel=INFO)
-
-from Configurables import PodioInput
-from Configurables import Jug__Base__InputCopier_dd4pod__Geant4ParticleCollection_dd4pod__Geant4ParticleCollection_ as MCCopier
-from Configurables import Jug__Base__InputCopier_dd4pod__CalorimeterHitCollection_dd4pod__CalorimeterHitCollection_ as CalCopier
-
-
-
-from Configurables import Jug__Digi__CrystalEndcapsDigi as CrystalEndcapsDigi
-from Configurables import Jug__Reco__CrystalEndcapsReco as CrystalEndcapsReco
-from Configurables import Jug__Reco__CalorimeterIslandCluster as IslandCluster
-from Configurables import Jug__Reco__ClusterRecoCoG as RecoCoG
-
-podioinput = PodioInput("PodioReader", collections=["mcparticles","EcalEndcapNHits"], OutputLevel=DEBUG)
-
-## copiers to get around input --> output copy bug. Note the "2" appended to the output collection.
-copier    = MCCopier("MCCopier", inputCollection="mcparticles", outputCollection="mcparticles2",OutputLevel=INFO) 
-calcopier = CalCopier("CalCopier", inputCollection="EcalEndcapNHits", outputCollection="EcalEndcapNHits2",OutputLevel=INFO) 
-
-emcaldigi = CrystalEndcapsDigi("ecal_digi", 
-        inputHitCollection="EcalEndcapNHits", 
-        outputHitCollection="RawDigiEcalHits")
-
-emcalreco = CrystalEndcapsReco("ecal_reco", 
-        inputHitCollection="RawDigiEcalHits", 
-        outputHitCollection="RecoEcalHits",
-        minModuleEdep=0.00001*units.MeV)
-
-emcalcluster = IslandCluster("emcal_cluster", 
-        inputHitCollection="RecoEcalHits", 
-        outputHitCollection="EcalClusterHits",
-        minClusterCenterEdep=50.0*units.MeV, 
-        groupRange=2.0)
-
-clusterreco = RecoCoG("cluster_reco", 
-        inputHitCollection="EcalClusterHits", 
-        outputClusterCollection="EcalClusters", 
-        logWeightBase=4.2, 
-        moduleDimZName="CrystalModule_sz")
-
-out = PodioOutput("out", filename=output_rec_file)
-
-out.outputCommands = ["keep *"]
-
-ApplicationMgr(
-    TopAlg = [podioinput, copier, calcopier,
-              emcaldigi, emcalreco, emcalcluster, clusterreco, out],
-    EvtSel = 'NONE',
-    EvtMax   = n_events,
-    ExtSvc = [podioevent],
-    OutputLevel=INFO
- )
diff --git a/benchmarks/ecal/options/deprecated/emcal_barrel_reco.py b/benchmarks/ecal/options/deprecated/emcal_barrel_reco.py
deleted file mode 100644
index 964e5c37..00000000
--- a/benchmarks/ecal/options/deprecated/emcal_barrel_reco.py
+++ /dev/null
@@ -1,126 +0,0 @@
-#######################################
-# EMCAL Barrel detector Reconstruction
-# J.KIM 04/02/2021
-#######################################
-
-from Gaudi.Configuration import *
-import os
-  
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
-from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
-from GaudiKernel import SystemOfUnits as units
-
-detector_name = "topside"
-if "JUGGLER_DETECTOR" in os.environ :
-  detector_name = str(os.environ["JUGGLER_DETECTOR"])
-
-if "JUGGLER_DETECTOR_PATH" in os.environ :
-  detector_name = str(os.environ["JUGGLER_DETECTOR_PATH"])+"/"+detector_name 
-
-input_sim_file = "jug_input.root"
-if "JUGGLER_SIM_FILE" in os.environ :
-  input_sim_file  = str(os.environ["JUGGLER_SIM_FILE"])
-else :
-  print(" ERROR : JUGGLER_SIM_FILE not set" )
-
-output_rec_file = "jug_rec.root"
-if "JUGGLER_REC_FILE" in os.environ :
-  output_rec_file = str(os.environ["JUGGLER_REC_FILE"])
-else :
-  print(" ERROR : JUGGLER_REC_FILE not set" )
-
-n_events = 100
-if "JUGGLER_N_EVENTS" in os.environ :
-  n_events = str(os.environ["JUGGLER_N_EVENTS"])
-
-# get sampling fraction from system environment variable, 1.0 by default
-sf = 1.0
-if "CB_EMCAL_SAMP_FRAC" in os.environ :
-  sf = str(os.environ["CB_EMCAL_SAMP_FRAC"])
-
-geo_service  = GeoSvc("GeoSvc", detectors=["{}.xml".format(detector_name)], OutputLevel=INFO)
-podioevent   = EICDataSvc("EventDataSvc", inputs=[input_sim_file], OutputLevel=DEBUG)
-
-from Configurables import PodioInput
-from Configurables import Jug__Base__InputCopier_dd4pod__Geant4ParticleCollection_dd4pod__Geant4ParticleCollection_ as MCCopier
-from Configurables import Jug__Base__InputCopier_dd4pod__CalorimeterHitCollection_dd4pod__CalorimeterHitCollection_ as CalCopier
-
-from Configurables import Jug__Digi__EcalTungstenSamplingDigi as EcalTungstenSamplingDigi
-
-from Configurables import Jug__Reco__EcalTungstenSamplingReco as EcalTungstenSamplingReco
-from Configurables import Jug__Reco__CalorimeterHitsMerger as CalorimeterHitsMerger
-from Configurables import Jug__Reco__CalorimeterIslandCluster as IslandCluster
-from Configurables import Jug__Reco__ClusterRecoCoG as RecoCoG
-
-podioinput = PodioInput("PodioReader", collections=["mcparticles","EcalBarrelHits"], OutputLevel=DEBUG)
-
-# Thrown Information
-copier = MCCopier("MCCopier", 
-        inputCollection="mcparticles", 
-        outputCollection="mcparticles2",
-        OutputLevel=DEBUG) 
-# Geant4 Information
-embarrelcopier = CalCopier("CalBarrelCopier", 
-        inputCollection="EcalBarrelHits", 
-        outputCollection="EcalBarrelHits2",
-        OutputLevel=DEBUG)
-# Digitization
-embarreldigi = EcalTungstenSamplingDigi("ecal_barrel_digi", 
-        inputHitCollection="EcalBarrelHits", 
-        outputHitCollection="RawEcalBarrelHits",
-        inputEnergyUnit=units.GeV,
-        inputTimeUnit=units.ns,
-        dynamicRangeADC=700*units.keV, 
-        energyResolutions=[0., 0.02, 0.], 
-        pedestalSigma=40,
-        OutputLevel=DEBUG)
-# Reconstruction
-embarrelreco = EcalTungstenSamplingReco("ecal_barrel_reco", 
-        inputHitCollection="RawEcalBarrelHits", 
-        outputHitCollection="RecoEcalBarrelHits",
-        dynamicRangeADC=700*units.keV, 
-        pedestalSigma=40,
-        OutputLevel=DEBUG)
-# 2D+1 Clusterings
-# readout id definition for barrel ecal
-# <id>system:8,barrel:3,module:4,layer:10,slice:5,x:32:-16,y:-16</id>
-# xy_merger sum layers/slices, masking (8+3+4, 8+3+4+5+10-1)
-embarrelxymerger = CalorimeterHitsMerger("ecal_barrel_xy_merger",
-        readoutClass="EcalBarrelHits",
-        fields=["layer", "slice"],
-        inputHitCollection="RecoEcalBarrelHits",
-        outputHitCollection="RecoEcalBarrelHitsXY")
-# xy_merger sum modules, masking (8+3+4+5+10, 8+3+4+5+10+32-1)
-embarrelzmerger = CalorimeterHitsMerger("ecal_barrel_z_merger",
-        readoutClass="EcalBarrelHits",
-        fields=["x", "y"],
-        inputHitCollection="RecoEcalBarrelHits",
-        outputHitCollection="RecoEcalBarrelHitsZ")
-# Clustering
-embarrelcluster = IslandCluster("ecal_barrel_cluster",
-        inputHitCollection="RecoEcalBarrelHitsXY",
-        outputHitCollection="EcalBarrelClusterHits",
-        minClusterCenterEdep=0.5*units.MeV,
-        splitCluster=False,
-        groupRanges=[2.0*units.cm, 2.0*units.cm, 2.0*units.cm],
-        OutputLevel=DEBUG)
-# Reconstruct the cluster with Center of Gravity method
-embarrelclusterreco = RecoCoG("ecal_barrel_clusterreco",
-        inputHitCollection="EcalBarrelClusterHits", 
-        outputClusterCollection="EcalBarrelClusters", 
-        logWeightBase=6.2,
-        samplingFraction=sf,
-        OutputLevel=DEBUG) 
-
-out = PodioOutput("out", filename=output_rec_file)
-
-out.outputCommands = ["keep *"]
-
-ApplicationMgr(
-    TopAlg = [podioinput, copier, embarrelcopier, embarreldigi, 
-        embarrelreco, embarrelxymerger, embarrelzmerger, embarrelcluster, embarrelclusterreco, out],
-    EvtSel = 'NONE',
-    EvtMax   = n_events,
-    ExtSvc = [podioevent],
-    OutputLevel=DEBUG
- )
diff --git a/benchmarks/ecal/options/deprecated/example_crystal.py b/benchmarks/ecal/options/deprecated/example_crystal.py
deleted file mode 100644
index 7f9e6ee4..00000000
--- a/benchmarks/ecal/options/deprecated/example_crystal.py
+++ /dev/null
@@ -1,42 +0,0 @@
-from Gaudi.Configuration import *
-import os
-  
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
-from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
-from GaudiKernel import SystemOfUnits as units
-
-detector_name = "topside"
-if "JUGGLER_DETECTOR" in os.environ :
-  detector_name = str(os.environ["JUGGLER_DETECTOR"])
-
-# todo add checks
-input_sim_file  = str(os.environ["JUGGLER_SIM_FILE"])
-output_rec_file = str(os.environ["JUGGLER_REC_FILE"])
-n_events = str(os.environ["JUGGLER_N_EVENTS"])
-
-geo_service  = GeoSvc("GeoSvc", detectors=["{}.xml".format(detector_name)])
-podioevent   = EICDataSvc("EventDataSvc", inputs=[input_sim_file], OutputLevel=DEBUG)
-
-from Configurables import PodioInput
-from Configurables import Jug__Digi__CrystalEndcapsDigi as CrystalEndcapsDigi
-from Configurables import Jug__Reco__CrystalEndcapsReco as CrystalEndcapsReco
-from Configurables import Jug__Reco__CalorimeterIslandCluster as IslandCluster
-from Configurables import Jug__Reco__ClusterRecoCoG as RecoCoG
-
-podioinput = PodioInput("PodioReader", collections=["mcparticles","CrystalEcalHits"], OutputLevel=DEBUG)
-emcaldigi = CrystalEndcapsDigi("ecal_digi", inputHitCollection="CrystalEcalHits", outputHitCollection="RawDigiEcalHits")
-emcalreco = CrystalEndcapsReco("ecal_reco", inputHitCollection="RawDigiEcalHits", outputHitCollection="RecoEcalHits", minModuleEdep=1.0*units.MeV)
-emcalcluster = IslandCluster("emcal_cluster", inputHitCollection="RecoEcalHits", outputHitCollection="EcalClusterHits", minClusterCenterEdep=30*units.MeV, groupRange=2.0)
-clusterreco = RecoCoG("cluster_reco", inputGitCollection="EcalClusterHits", outputClusterCollection="EcalClusters", logWeightBase=4.2, moduleDimZName="CrystalModule_sz")
-
-out = PodioOutput("out", filename=output_rec_file)
-
-out.outputCommands = ["keep *"]
-
-ApplicationMgr(
-    TopAlg = [podioinput, emcaldigi, emcalreco, emcalcluster, clusterreco, out],
-    EvtSel = 'NONE',
-    EvtMax   = n_events,
-    ExtSvc = [podioevent],
-    OutputLevel=DEBUG
- )
diff --git a/benchmarks/ecal/options/deprecated/full_em_calorimeter_reco.py b/benchmarks/ecal/options/deprecated/full_em_calorimeter_reco.py
deleted file mode 100644
index 67c531fd..00000000
--- a/benchmarks/ecal/options/deprecated/full_em_calorimeter_reco.py
+++ /dev/null
@@ -1,111 +0,0 @@
-from Gaudi.Configuration import *
-import os
-  
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
-from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
-from GaudiKernel import SystemOfUnits as units
-
-detector_name = "topside"
-if "JUGGLER_DETECTOR" in os.environ :
-  detector_name = str(os.environ["JUGGLER_DETECTOR"])
-
-if "JUGGLER_DETECTOR_PATH" in os.environ :
-      detector_name = str(os.environ["JUGGLER_DETECTOR_PATH"])+"/"+detector_name 
-
-input_sim_file = "jug_input.root"
-if "JUGGLER_SIM_FILE" in os.environ :
-  input_sim_file  = str(os.environ["JUGGLER_SIM_FILE"])
-else :
-    print(" ERROR : JUGGLER_SIM_FILE not set" )
-
-output_rec_file = "jug_rec.root"
-if "JUGGLER_REC_FILE" in os.environ :
-  output_rec_file = str(os.environ["JUGGLER_REC_FILE"])
-else :
-    print(" ERROR : JUGGLER_REC_FILE not set" )
-
-n_events = 100
-if "JUGGLER_N_EVENTS" in os.environ :
-  n_events = str(os.environ["JUGGLER_N_EVENTS"])
-
-geo_service  = GeoSvc("GeoSvc", detectors=["{}.xml".format(detector_name)], OutputLevel=INFO)
-podioevent   = EICDataSvc("EventDataSvc", inputs=[input_sim_file], OutputLevel=DEBUG)
-
-from Configurables import PodioInput
-from Configurables import Jug__Base__InputCopier_dd4pod__Geant4ParticleCollection_dd4pod__Geant4ParticleCollection_ as MCCopier
-from Configurables import Jug__Base__InputCopier_dd4pod__CalorimeterHitCollection_dd4pod__CalorimeterHitCollection_ as CalCopier
-
-from Configurables import Jug__Digi__CrystalEndcapsDigi as CrystalEndcapsDigi
-from Configurables import Jug__Digi__EcalTungstenSamplingDigi as EcalTungstenSamplingDigi
-
-from Configurables import Jug__Reco__CrystalEndcapsReco as CrystalEndcapsReco
-from Configurables import Jug__Reco__CalorimeterIslandCluster as IslandCluster
-from Configurables import Jug__Reco__ClusterRecoCoG as RecoCoG
-
-podioinput = PodioInput("PodioReader", collections=["mcparticles","EcalEndcapNHits","EcalBarrelHits","EcalEndcapPHits"], OutputLevel=DEBUG)
-
-## copiers to get around input --> output copy bug. Note the "2" appended to the output collection.
-copier = MCCopier("MCCopier", 
-        inputCollection="mcparticles", 
-        outputCollection="mcparticles2",
-        OutputLevel=DEBUG) 
-
-calcopier = CalCopier("CalCopier", 
-        inputCollection="EcalEndcapNHits", 
-        outputCollection="EcalEndcapNHits2",
-        OutputLevel=DEBUG)
-
-embarrelcopier = CalCopier("CalBarrelCopier", 
-        inputCollection="EcalBarrelHits", 
-        outputCollection="EcalBarrelHits2",
-        OutputLevel=DEBUG)
-
-embarreldigi = EcalTungstenSamplingDigi("ecal_barrel_digi", 
-        inputHitCollection="EcalBarrelHits", 
-        outputHitCollection="RawEcalBarrelHits",
-        inputEnergyUnit=units.GeV,
-        inputTimeUnit=units.ns,
-        dynamicRangeADC=700*units.keV, 
-        energyResolutions=[0., 0.02, 0.], 
-        pedestalSigma=40,
-        OutputLevel=DEBUG)
-
-emendcapdigi = EcalTungstenSamplingDigi("ec_endcap_digi", 
-        inputHitCollection="EcalEndcapPHits", 
-        outputHitCollection="RawEcalEndcapPHits",
-        energyResolution=0.07,
-        OutputLevel=DEBUG)
-
-emcaldigi = CrystalEndcapsDigi("ecal_digi", 
-        inputHitCollection="EcalEndcapNHits", 
-        outputHitCollection="RawDigiEcalHits")
-
-emcalreco = CrystalEndcapsReco("ecal_reco", 
-        inputHitCollection="RawDigiEcalHits", 
-        outputHitCollection="RecoEcalHits",
-        minModuleEdep=0.00001*units.MeV)
-
-emcalcluster = IslandCluster("emcal_cluster", 
-        inputHitCollection="RecoEcalHits", 
-        outputHitCollection="EcalClusterHits",
-        minClusterCenterEdep=50.0*units.MeV, 
-        groupRange=2.0)
-
-clusterreco = RecoCoG("cluster_reco", 
-        inputHitCollection="EcalClusterHits", 
-        outputClusterCollection="EcalClusters", 
-        logWeightBase=4.2, 
-        moduleDimZName="CrystalModule_sz")
-
-out = PodioOutput("out", filename=output_rec_file)
-
-out.outputCommands = ["keep *"]
-
-ApplicationMgr(
-    TopAlg = [podioinput, copier, calcopier, embarrelcopier,
-              embarreldigi, emendcapdigi, emcaldigi, emcalreco, emcalcluster, clusterreco, out],
-    EvtSel = 'NONE',
-    EvtMax   = n_events,
-    ExtSvc = [podioevent],
-    OutputLevel=DEBUG
- )
diff --git a/benchmarks/ecal/options/endcap_e.py b/benchmarks/ecal/options/endcap_e.py
index 609c83da..fc907180 100644
--- a/benchmarks/ecal/options/endcap_e.py
+++ b/benchmarks/ecal/options/endcap_e.py
@@ -5,7 +5,6 @@ from Gaudi.Configuration import *
 import os
 import ROOT
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioInput, PodioOutput, GeoSvc
 from GaudiKernel.SystemOfUnits import MeV, GeV, mm, cm, mrad
 
diff --git a/benchmarks/ecal/options/endcap_i.py b/benchmarks/ecal/options/endcap_i.py
index e03f8ad9..48b6408e 100644
--- a/benchmarks/ecal/options/endcap_i.py
+++ b/benchmarks/ecal/options/endcap_i.py
@@ -6,7 +6,6 @@ from Gaudi.Configuration import *
 import os
 import ROOT
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioInput, PodioOutput, GeoSvc
 from GaudiKernel.SystemOfUnits import MeV, GeV, mm, cm, mrad
 
diff --git a/benchmarks/full/options/full_reconstruction.py b/benchmarks/full/options/full_reconstruction.py
index 6195d49b..16694906 100644
--- a/benchmarks/full/options/full_reconstruction.py
+++ b/benchmarks/full/options/full_reconstruction.py
@@ -1,6 +1,5 @@
 from Gaudi.Configuration import *
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
 from GaudiKernel import SystemOfUnits as units
 from GaudiKernel.SystemOfUnits import MeV, GeV, mm, cm, mrad
diff --git a/benchmarks/imaging_ecal/options/hybrid_cluster.py b/benchmarks/imaging_ecal/options/hybrid_cluster.py
index 707247ab..e89cef98 100644
--- a/benchmarks/imaging_ecal/options/hybrid_cluster.py
+++ b/benchmarks/imaging_ecal/options/hybrid_cluster.py
@@ -3,7 +3,6 @@ import ROOT
 from Gaudi.Configuration import *
 from GaudiKernel.SystemOfUnits import MeV, mm, cm, mrad, rad, ns
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
 
 from Configurables import PodioInput
diff --git a/benchmarks/imaging_ecal/options/imaging_2dcluster.py b/benchmarks/imaging_ecal/options/imaging_2dcluster.py
index 73d3def1..e58e962f 100644
--- a/benchmarks/imaging_ecal/options/imaging_2dcluster.py
+++ b/benchmarks/imaging_ecal/options/imaging_2dcluster.py
@@ -2,7 +2,6 @@ import os
 import ROOT
 from Gaudi.Configuration import *
 from GaudiKernel.SystemOfUnits import mm, MeV, rad, ns
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
 
 from Configurables import PodioInput
diff --git a/benchmarks/imaging_ecal/options/imaging_topocluster.py b/benchmarks/imaging_ecal/options/imaging_topocluster.py
index 72a983bb..572544ef 100644
--- a/benchmarks/imaging_ecal/options/imaging_topocluster.py
+++ b/benchmarks/imaging_ecal/options/imaging_topocluster.py
@@ -3,7 +3,6 @@ import ROOT
 from Gaudi.Configuration import *
 from GaudiKernel import SystemOfUnits as units
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
 
 from Configurables import PodioInput
diff --git a/benchmarks/imaging_ecal/options/scfi_cluster.py b/benchmarks/imaging_ecal/options/scfi_cluster.py
index 3ab0d5cc..873c3b89 100644
--- a/benchmarks/imaging_ecal/options/scfi_cluster.py
+++ b/benchmarks/imaging_ecal/options/scfi_cluster.py
@@ -2,7 +2,6 @@ import os
 import ROOT
 from Gaudi.Configuration import *
 from GaudiKernel.SystemOfUnits import mm, MeV, rad, ns
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
 
 from Configurables import PodioInput
diff --git a/benchmarks/imaging_shower_ML/options/imaging_ml_data.py b/benchmarks/imaging_shower_ML/options/imaging_ml_data.py
index 4c46af45..1bdc3f2f 100644
--- a/benchmarks/imaging_shower_ML/options/imaging_ml_data.py
+++ b/benchmarks/imaging_shower_ML/options/imaging_ml_data.py
@@ -3,7 +3,6 @@ import ROOT
 from Gaudi.Configuration import *
 from GaudiKernel import SystemOfUnits as units
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
 
 from Configurables import PodioInput
diff --git a/benchmarks/rich/options/rich_reco.py b/benchmarks/rich/options/rich_reco.py
index 640fb8de..edf86520 100644
--- a/benchmarks/rich/options/rich_reco.py
+++ b/benchmarks/rich/options/rich_reco.py
@@ -1,7 +1,6 @@
 from Gaudi.Configuration import *
 from GaudiKernel import SystemOfUnits as units
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
 
 detector_name = "topside"
diff --git a/benchmarks/tracking/options/tracker_reconstruction.py b/benchmarks/tracking/options/tracker_reconstruction.py
index ba2cbf0b..733eb8cc 100644
--- a/benchmarks/tracking/options/tracker_reconstruction.py
+++ b/benchmarks/tracking/options/tracker_reconstruction.py
@@ -1,6 +1,5 @@
 from Gaudi.Configuration import *
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
 from GaudiKernel import SystemOfUnits as units
 
@@ -196,7 +195,7 @@ parts_from_fit1 = ParticlesFromTrackFit("parts_from_fit1",
 #    props = configurable.getDefaultProperties()
 #    for propname, prop in sorted(props.items()):
 #        print(" prop name: {}".format(propname))
-#        if isinstance(prop, DataObjectHandleBase):
+#        if isinstance(prop, DataHandleBase):
 #            types.append(prop.type())
 #            print("  {}: \"{}\"".format(propname, prop.type()))
 #print("---")
diff --git a/benchmarks/tracking/options/truth_seeded_tracking.py b/benchmarks/tracking/options/truth_seeded_tracking.py
index 00ea29ed..3c9ee9cb 100644
--- a/benchmarks/tracking/options/truth_seeded_tracking.py
+++ b/benchmarks/tracking/options/truth_seeded_tracking.py
@@ -1,6 +1,5 @@
 from Gaudi.Configuration import *
 
-from GaudiKernel.DataObjectHandleBase import DataObjectHandleBase
 from Configurables import ApplicationMgr, EICDataSvc, PodioOutput, GeoSvc
 from GaudiKernel.SystemOfUnits import MeV, GeV, mm, cm, mrad
 
-- 
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