diff --git a/benchmarks/tracking/central_electrons.sh b/benchmarks/tracking/central_electrons.sh
index d3c3cace5be61bd9cfb6c682579357029992fb64..1a6e9c2a4d24352478e0341dcd2ddfe48aa3eaab 100644
--- a/benchmarks/tracking/central_electrons.sh
+++ b/benchmarks/tracking/central_electrons.sh
@@ -97,10 +97,9 @@ rootls -t ${JUGGLER_SIM_FILE}
 
 if [[ -z "${ANALYSIS_ONLY}" ]] ;
 then
-  # Need to figure out how to pass file name to juggler from the commandline
-  gaudirun.py benchmarks/tracking/options/track_reconstruction.py
-  if [[ "$?" -ne "0" ]] ; then
-    echo "ERROR running juggler"
+  JANA_HOME=/usr/local/lib/EICrecon eicrecon -Ppodio:output_file=${JUGGLER_REC_FILE} ${JUGGLER_SIM_FILE}
+  if [ "$?" -ne "0" ] ; then
+    echo "ERROR running eicrecon"
     exit 1
   fi
 fi
diff --git a/benchmarks/tracking/central_pions.sh b/benchmarks/tracking/central_pions.sh
index 587ec115a944ab41239b1c533656bbe57faf5573..f3b3d4ff1dce911c9ea9c2b8798fcc9c1c0cca3a 100644
--- a/benchmarks/tracking/central_pions.sh
+++ b/benchmarks/tracking/central_pions.sh
@@ -96,10 +96,9 @@ rootls -t ${JUGGLER_SIM_FILE}
 
 if [[ -z "${ANALYSIS_ONLY}" ]] ;
 then
-  # Need to figure out how to pass file name to juggler from the commandline
-  gaudirun.py benchmarks/tracking/options/track_reconstruction.py
-  if [[ "$?" -ne "0" ]] ; then
-    echo "ERROR running juggler"
+  JANA_HOME=/usr/local/lib/EICrecon eicrecon -Ppodio:output_file=${JUGGLER_REC_FILE} ${JUGGLER_SIM_FILE}
+  if [ "$?" -ne "0" ] ; then
+    echo "ERROR running eicrecon"
     exit 1
   fi
 fi
diff --git a/benchmarks/tracking/multiple_tracks.sh b/benchmarks/tracking/multiple_tracks.sh
index 11500869632c73aa76809b8fb4943b4f720989cb..ec072a5b02609e620b28d605b2edf6772ae40d7c 100644
--- a/benchmarks/tracking/multiple_tracks.sh
+++ b/benchmarks/tracking/multiple_tracks.sh
@@ -97,10 +97,9 @@ rootls -t ${JUGGLER_SIM_FILE}
 
 if [[ -z "${ANALYSIS_ONLY}" ]] ;
 then
-  # Need to figure out how to pass file name to juggler from the commandline
-  gaudirun.py benchmarks/tracking/options/track_reconstruction.py
-  if [[ "$?" -ne "0" ]] ; then
-    echo "ERROR running juggler"
+  JANA_HOME=/usr/local/lib/EICrecon eicrecon -Ppodio:output_file=${JUGGLER_REC_FILE} ${JUGGLER_SIM_FILE}
+  if [ "$?" -ne "0" ] ; then
+    echo "ERROR running eicrecon"
     exit 1
   fi
 fi