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Restructuring repo

Merged Whitney Armstrong requested to merge restructure2 into master
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@@ -63,7 +63,8 @@ cal_bench:crystal_benchmark:
- ["cal_sim:crystal_emcal"]
script:
- rootls -t sim_output/output_emcal_electrons.root
- root -b -q benchmarks/calorimeters/simple_checking_crystal.cxx+
- echo " Not yet complete"
#- root -b -q benchmarks/calorimeters/simple_checking_crystal.cxx+
#cal_test_3_zdc_neutrons_reader:
#stage: benchmarks
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