From 8de512aaa6642aedcdd0d0d29eb42353cd14568d Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Mon, 7 Oct 2024 18:39:00 -0400
Subject: [PATCH] Snakefile: fix caching in fetch_epic (#78)
---
Snakefile | 3 +++
1 file changed, 3 insertions(+)
diff --git a/Snakefile b/Snakefile
index 54323284..9fbb633a 100644
--- a/Snakefile
+++ b/Snakefile
@@ -34,6 +34,9 @@ def get_remote_path(path):
rule fetch_epic:
output:
filepath="EPIC/{PATH}"
+ params:
+ # wildcards are not included in hash for caching, we need to add them as params
+ PATH=lambda wildcards: wildcards.PATH
cache: True
retries: 3
shell: """
--
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