From 6e99ae8b291211ef519a21eb414cf833fc7e4c31 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Sat, 19 Oct 2024 09:24:52 -0400
Subject: [PATCH] .gitlab-ci.yml: introduce global SNAKEMAKE_FLAGS, don't
re-run based on mtime (#92)
---
.gitlab-ci.yml | 1 +
benchmarks/backgrounds/config.yml | 6 +++---
benchmarks/backwards_ecal/config.yml | 6 +++---
benchmarks/barrel_ecal/config.yml | 20 +++++++++----------
benchmarks/ecal_gaps/config.yml | 6 +++---
benchmarks/femc_electron/config.yml | 6 +++---
benchmarks/femc_photon/config.yml | 6 +++---
benchmarks/femc_pi0/config.yml | 6 +++---
benchmarks/insert_muon/config.yml | 6 +++---
benchmarks/insert_neutron/config.yml | 6 +++---
benchmarks/lfhcal/config.yml | 8 ++++----
benchmarks/material_scan/config.yml | 2 +-
benchmarks/tracking_performances/config.yml | 8 ++++----
.../tracking_performances_dis/config.yml | 6 +++---
benchmarks/zdc_lambda/config.yml | 6 +++---
benchmarks/zdc_lyso/config.yml | 4 ++--
benchmarks/zdc_photon/config.yml | 2 +-
benchmarks/zdc_pi0/config.yml | 2 +-
benchmarks/zdc_sigma/config.yml | 6 +++---
19 files changed, 57 insertions(+), 56 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index f25c74e9..7a19fd1a 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -5,6 +5,7 @@ variables:
DETECTOR_CONFIG: epic_craterlake
GITHUB_SHA: ''
GITHUB_REPOSITORY: ''
+ SNAKEMAKE_FLAGS: '--cache --rerun-triggers code input params software-env'
workflow:
name: '$PIPELINE_NAME'
diff --git a/benchmarks/backgrounds/config.yml b/benchmarks/backgrounds/config.yml
index c4d084d7..79b864bb 100644
--- a/benchmarks/backgrounds/config.yml
+++ b/benchmarks/backgrounds/config.yml
@@ -5,7 +5,7 @@ sim:backgrounds:
- mkdir -p $LOCAL_DATA_PATH/input
- ln -s $LOCAL_DATA_PATH/input input
- |
- snakemake --cache --cores 2 \
+ snakemake $SNAKEMAKE_FLAGS --cores 2 \
sim_output/$DETECTOR_CONFIG/backgrounds/EPIC/EVGEN/BACKGROUNDS/BEAMGAS/electron/GETaLM1.0.0-1.0/10GeV/GETaLM1.0.0-1.0_ElectronBeamGas_10GeV_foam_emin10keV_run001.edm4hep.root \
sim_output/$DETECTOR_CONFIG/backgrounds/EPIC/EVGEN/DIS/NC/10x100/minQ2=1/pythia8NCDIS_10x100_minQ2=1_beamEffects_xAngle=-0.025_hiDiv_1.edm4hep.root \
sim_output/$DETECTOR_CONFIG/backgrounds/EPIC/EVGEN/BACKGROUNDS/BEAMGAS/proton/pythia8.306-1.0/100GeV/pythia8.306-1.0_ProtonBeamGas_100GeV_run001.edm4hep.root
@@ -19,7 +19,7 @@ bench:backgrounds_emcal_backwards:
- ln -s $LOCAL_DATA_PATH/input input
- export PYTHONUSERBASE=$LOCAL_DATA_PATH/deps
- pip install -r benchmarks/backgrounds/requirements.txt
- - snakemake --cores 8 backgrounds_ecal_backwards
+ - snakemake $SNAKEMAKE_FLAGS --cores 8 backgrounds_ecal_backwards
collect_results:backgrounds:
extends: .det_benchmark
@@ -29,5 +29,5 @@ collect_results:backgrounds:
script:
- ls -lrht
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output backgrounds_ecal_backwards
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output backgrounds_ecal_backwards
- mv results{_save,}/
diff --git a/benchmarks/backwards_ecal/config.yml b/benchmarks/backwards_ecal/config.yml
index 9eff9b58..7048f8e7 100644
--- a/benchmarks/backwards_ecal/config.yml
+++ b/benchmarks/backwards_ecal/config.yml
@@ -16,7 +16,7 @@ sim:backwards_ecal:
]
script:
- |
- snakemake --cache --cores 5 sim_output/backwards_ecal/${DETECTOR_CONFIG}/${PARTICLE}/${MOMENTUM}/130to177deg/flag
+ snakemake $SNAKEMAKE_FLAGS --cores 5 sim_output/backwards_ecal/${DETECTOR_CONFIG}/${PARTICLE}/${MOMENTUM}/130to177deg/flag
bench:backwards_ecal:
extends: .det_benchmark
@@ -26,7 +26,7 @@ bench:backwards_ecal:
script:
- export PYTHONUSERBASE=$LOCAL_DATA_PATH/deps
- pip install -r benchmarks/backwards_ecal/requirements.txt
- - snakemake --cores 1 backwards_ecal
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 backwards_ecal
collect_results:backwards_ecal:
extends: .det_benchmark
@@ -36,5 +36,5 @@ collect_results:backwards_ecal:
script:
- ls -lrht
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output backwards_ecal
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output backwards_ecal
- mv results{_save,}/
diff --git a/benchmarks/barrel_ecal/config.yml b/benchmarks/barrel_ecal/config.yml
index a236f68b..45fc3e1c 100644
--- a/benchmarks/barrel_ecal/config.yml
+++ b/benchmarks/barrel_ecal/config.yml
@@ -2,13 +2,13 @@ sim:emcal_barrel_pions:
extends: .det_benchmark
stage: simulate
script:
- - snakemake --cores 1 $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_{piplus,piminus}_energies5.0_5.0.edm4hep.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_{piplus,piminus}_energies5.0_5.0.edm4hep.root
sim:emcal_barrel_pi0:
extends: .det_benchmark
stage: simulate
script:
- - snakemake --cores 1 $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_pi0_energies5.0_5.0.edm4hep.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_pi0_energies5.0_5.0.edm4hep.root
sim:emcal_barrel_electrons:
extends: .det_benchmark
@@ -16,20 +16,20 @@ sim:emcal_barrel_electrons:
script:
- if [[ "$RUN_EXTENDED_BENCHMARK" == "true" ]] ; then snakemake --cores $DETECTOR_CONFIG/results/energy_scan/emcal_barrel_electron_fsam_scan.png; fi
- export JUGGLER_N_EVENTS=400
- - snakemake --cores 1 $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_electron_energies5.0_5.0.edm4hep.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_electron_energies5.0_5.0.edm4hep.root
sim:emcal_barrel_photons:
extends: .det_benchmark
stage: simulate
script:
- if [[ "$RUN_EXTENDED_BENCHMARK" == "true" ]] ; then snakemake --cores $DETECTOR_CONFIG/results/energy_scan/emcal_barrel_proton_fsam_scan.png; fi
- - snakemake --cores 1 $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_photon_energies5.0_5.0.edm4hep.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_photon_energies5.0_5.0.edm4hep.root
sim:emcal_barrel_pion_rejection:
extends: .det_benchmark
stage: simulate
script:
- - snakemake --cores 1 $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_{piminus,electron}_energies1.0_18.0.edm4hep.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_{piminus,electron}_energies1.0_18.0.edm4hep.root
calib:emcal_barrel_electrons:
extends: .det_benchmark
@@ -39,7 +39,7 @@ calib:emcal_barrel_electrons:
script:
- ls -lhtR sim_output/
- rootls -t sim_output/sim_emcal_barrel_electron_energies5.0_5.0.edm4hep.root
- - snakemake --cores 1 $DETECTOR_CONFIG/results/emcal_barrel_electron_calibration.json
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 $DETECTOR_CONFIG/results/emcal_barrel_electron_calibration.json
- mv sim_output/sim_emcal_barrel_electron.edm4hep.root results/.
- echo "JSON file(s) from analysis:" ; cat results/*.json
@@ -49,7 +49,7 @@ bench:emcal_barrel_pions:
needs:
- ["sim:emcal_barrel_pions"]
script:
- - snakemake --cores 1 $DETECTOR_CONFIG/results/emcal_barrel_pions_Ethr.png
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 $DETECTOR_CONFIG/results/emcal_barrel_pions_Ethr.png
bench:emcal_barrel_electrons_scan:
extends: .det_benchmark
@@ -66,7 +66,7 @@ bench:emcal_barrel_pi0:
- ["sim:emcal_barrel_pi0", "calib:emcal_barrel_electrons"]
script:
- echo "JSON file(s) from analysis:" ; cat results/*.json
- - snakemake --cores 1 epic_craterlake/results/Barrel_emcal_pi0.json
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 epic_craterlake/results/Barrel_emcal_pi0.json
bench:emcal_barrel_photons:
extends: .det_benchmark
@@ -76,7 +76,7 @@ bench:emcal_barrel_photons:
script:
- ls -lhtR sim_output/
- rootls -t sim_output/sim_emcal_barrel_photon_energies5.0_5.0.edm4hep.root
- - snakemake --cores 1 $DETECTOR_CONFIG/results/emcal_barrel_photon_calibration.json
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 $DETECTOR_CONFIG/results/emcal_barrel_photon_calibration.json
- mv sim_output/sim_emcal_barrel_photon.edm4hep.root results/.
- if [[ "$RUN_EXTENDED_BENCHMARK" == "true" ]] ; then snakemake --cores $DETECTOR_CONFIG/results/energy_scan/emcal_barrel_proton_fsam_scan.png; fi
@@ -89,7 +89,7 @@ bench:emcal_barrel_pion_rejection:
- ls -lhtR sim_output/
- rootls -t $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_piminus_energies1.0_18.0.edm4hep.root
- rootls -t $DETECTOR_CONFIG/sim_output/sim_emcal_barrel_electron_energies1.0_18.0.edm4hep.root
- - snakemake --cores 1 $DETECTOR_CONFIG/results/Barrel_emcal_pion_rej.json
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 $DETECTOR_CONFIG/results/Barrel_emcal_pion_rej.json
collect_results:barrel_ecal:
extends: .det_benchmark
diff --git a/benchmarks/ecal_gaps/config.yml b/benchmarks/ecal_gaps/config.yml
index 9d967c87..9c0a8a09 100644
--- a/benchmarks/ecal_gaps/config.yml
+++ b/benchmarks/ecal_gaps/config.yml
@@ -4,7 +4,7 @@ sim:ecal_gaps:
script:
- mkdir -p $LOCAL_DATA_PATH/input
- ln -s $LOCAL_DATA_PATH/input input
- - snakemake --cache --cores 10 ecal_gaps --omit-from ecal_gaps
+ - snakemake $SNAKEMAKE_FLAGS --cache --cores 10 ecal_gaps --omit-from ecal_gaps
bench:ecal_gaps:
extends: .det_benchmark
@@ -15,7 +15,7 @@ bench:ecal_gaps:
- ln -s $LOCAL_DATA_PATH/input input
- export PYTHONUSERBASE=$LOCAL_DATA_PATH/deps
- pip install -r benchmarks/ecal_gaps/requirements.txt
- - snakemake --cores 8 ecal_gaps
+ - snakemake $SNAKEMAKE_FLAGS --cores 8 ecal_gaps
collect_results:ecal_gaps:
extends: .det_benchmark
@@ -25,5 +25,5 @@ collect_results:ecal_gaps:
script:
- ls -lrht
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output ecal_gaps
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output ecal_gaps
- mv results{_save,}/
diff --git a/benchmarks/femc_electron/config.yml b/benchmarks/femc_electron/config.yml
index 7b6f1043..11c8deea 100644
--- a/benchmarks/femc_electron/config.yml
+++ b/benchmarks/femc_electron/config.yml
@@ -13,7 +13,7 @@ sim:femc_electron:
- P: 80
timeout: 1 hours
script:
- - snakemake --cores 1 sim_output/femc_electron/epic_craterlake_rec_e-_${P}GeV.edm4eic.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 sim_output/femc_electron/epic_craterlake_rec_e-_${P}GeV.edm4eic.root
retry:
max: 2
when:
@@ -24,7 +24,7 @@ bench:femc_electron:
stage: benchmarks
needs: ["sim:femc_electron"]
script:
- - snakemake --cores 1 results/epic_craterlake/femc_electron
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 results/epic_craterlake/femc_electron
collect_results:femc_electron:
extends: .det_benchmark
@@ -33,5 +33,5 @@ collect_results:femc_electron:
script:
- ls -al
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output results/epic_craterlake/femc_electron
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output results/epic_craterlake/femc_electron
- mv results{_save,}/
diff --git a/benchmarks/femc_photon/config.yml b/benchmarks/femc_photon/config.yml
index af710897..dca2694e 100644
--- a/benchmarks/femc_photon/config.yml
+++ b/benchmarks/femc_photon/config.yml
@@ -13,7 +13,7 @@ sim:femc_photon:
- P: 80
timeout: 1 hours
script:
- - snakemake --cores 1 sim_output/femc_photon/epic_craterlake_rec_photon_${P}GeV.edm4eic.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 sim_output/femc_photon/epic_craterlake_rec_photon_${P}GeV.edm4eic.root
retry:
max: 2
when:
@@ -24,7 +24,7 @@ bench:femc_photon:
stage: benchmarks
needs: ["sim:femc_photon"]
script:
- - snakemake --cores 1 results/epic_craterlake/femc_photon
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 results/epic_craterlake/femc_photon
collect_results:femc_photon:
extends: .det_benchmark
@@ -33,5 +33,5 @@ collect_results:femc_photon:
script:
- ls -al
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output results/epic_craterlake/femc_photon
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output results/epic_craterlake/femc_photon
- mv results{_save,}/
diff --git a/benchmarks/femc_pi0/config.yml b/benchmarks/femc_pi0/config.yml
index 46e6ed9e..787cb583 100644
--- a/benchmarks/femc_pi0/config.yml
+++ b/benchmarks/femc_pi0/config.yml
@@ -12,7 +12,7 @@ sim:femc_pi0:
- P: 70
- P: 80
script:
- - snakemake --cores 1 sim_output/femc_pi0/epic_craterlake_rec_pi0_${P}GeV.edm4eic.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 sim_output/femc_pi0/epic_craterlake_rec_pi0_${P}GeV.edm4eic.root
retry:
max: 2
when:
@@ -23,7 +23,7 @@ bench:femc_pi0:
stage: benchmarks
needs: ["sim:femc_pi0"]
script:
- - snakemake --cores 1 results/epic_craterlake/femc_pi0
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 results/epic_craterlake/femc_pi0
collect_results:femc_pi0:
extends: .det_benchmark
@@ -32,5 +32,5 @@ collect_results:femc_pi0:
script:
- ls -al
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output results/epic_craterlake/femc_pi0
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output results/epic_craterlake/femc_pi0
- mv results{_save,}/
diff --git a/benchmarks/insert_muon/config.yml b/benchmarks/insert_muon/config.yml
index 76899c1d..4e3272af 100644
--- a/benchmarks/insert_muon/config.yml
+++ b/benchmarks/insert_muon/config.yml
@@ -5,7 +5,7 @@ sim:insert_muon:
matrix:
- P: 50
script:
- - snakemake --cores 5 sim_output/insert_muon/epic_craterlake_sim_mu-_${P}GeV_{0,1,2,3,4}.edm4hep.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 5 sim_output/insert_muon/epic_craterlake_sim_mu-_${P}GeV_{0,1,2,3,4}.edm4hep.root
retry:
max: 2
when:
@@ -16,7 +16,7 @@ bench:insert_muon:
stage: benchmarks
needs: ["sim:insert_muon"]
script:
- - snakemake --cores 1 results/epic_craterlake/insert_muon
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 results/epic_craterlake/insert_muon
collect_results:insert_muon:
extends: .det_benchmark
@@ -25,5 +25,5 @@ collect_results:insert_muon:
script:
- ls -al
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output results/epic_craterlake/insert_muon
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output results/epic_craterlake/insert_muon
- mv results{_save,}/
diff --git a/benchmarks/insert_neutron/config.yml b/benchmarks/insert_neutron/config.yml
index eedac937..90435261 100644
--- a/benchmarks/insert_neutron/config.yml
+++ b/benchmarks/insert_neutron/config.yml
@@ -11,7 +11,7 @@ sim:insert_neutron:
- P: 70
- P: 80
script:
- - snakemake --cores 5 sim_output/insert_neutron/epic_craterlake_rec_neutron_${P}GeV_{0,1,2,3,4}.edm4eic.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 5 sim_output/insert_neutron/epic_craterlake_rec_neutron_${P}GeV_{0,1,2,3,4}.edm4eic.root
retry:
max: 2
when:
@@ -22,7 +22,7 @@ bench:insert_neutron:
stage: benchmarks
needs: ["sim:insert_neutron"]
script:
- - snakemake --cores 1 results/epic_craterlake/insert_neutron
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 results/epic_craterlake/insert_neutron
collect_results:insert_neutron:
extends: .det_benchmark
@@ -31,5 +31,5 @@ collect_results:insert_neutron:
script:
- ls -al
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output results/epic_craterlake/insert_neutron
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output results/epic_craterlake/insert_neutron
- mv results{_save,}/
diff --git a/benchmarks/lfhcal/config.yml b/benchmarks/lfhcal/config.yml
index a6dfcbe4..8dfc7130 100644
--- a/benchmarks/lfhcal/config.yml
+++ b/benchmarks/lfhcal/config.yml
@@ -16,7 +16,7 @@ bench:lfhcal:
needs:
- ["sim:lfhcal"]
script:
- - snakemake --cores 3 lfhcal_local
+ - snakemake $SNAKEMAKE_FLAGS --cores 3 lfhcal_local
collect_results:lfhcal:
extends: .det_benchmark
@@ -26,7 +26,7 @@ collect_results:lfhcal:
script:
- ls -lrht
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output lfhcal_local
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output lfhcal_local
- mv results{_save,}/
bench:lfhcal_campaigns:
@@ -34,7 +34,7 @@ bench:lfhcal_campaigns:
stage: benchmarks
#when: manual
script:
- - snakemake --cores 1 lfhcal_campaigns
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 lfhcal_campaigns
collect_results:lfhcal_campaigns:
extends: .det_benchmark
@@ -44,5 +44,5 @@ collect_results:lfhcal_campaigns:
script:
- ls -lrht
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output lfhcal_campaigns
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output lfhcal_campaigns
- mv results{_save,}/
diff --git a/benchmarks/material_scan/config.yml b/benchmarks/material_scan/config.yml
index f8bc0822..3c87305e 100644
--- a/benchmarks/material_scan/config.yml
+++ b/benchmarks/material_scan/config.yml
@@ -2,7 +2,7 @@ bench:material_scan:
extends: .det_benchmark
stage: benchmarks
script:
- - snakemake --cores 1 epic_craterlake/results/material_scan_details.pdf
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 epic_craterlake/results/material_scan_details.pdf
collect_results:material_scan:
extends: .det_benchmark
diff --git a/benchmarks/tracking_performances/config.yml b/benchmarks/tracking_performances/config.yml
index 90a0d0f6..2419000b 100644
--- a/benchmarks/tracking_performances/config.yml
+++ b/benchmarks/tracking_performances/config.yml
@@ -18,7 +18,7 @@ bench:tracking_performance:
needs:
- ["sim:tracking_performance"]
script:
- - snakemake --cores 3 tracking_performance_local
+ - snakemake $SNAKEMAKE_FLAGS --cores 3 tracking_performance_local
collect_results:tracking_performance:
extends: .det_benchmark
@@ -27,14 +27,14 @@ collect_results:tracking_performance:
- "bench:tracking_performance"
script:
- ls -lrht
- - snakemake --cores 1 --delete-all-output tracking_performance_local
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output tracking_performance_local
bench:tracking_performance_campaigns:
extends: .det_benchmark
stage: benchmarks
#when: manual
script:
- - snakemake --cores 1 tracking_performance_campaigns
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 tracking_performance_campaigns
collect_results:tracking_performance_campaigns:
extends: .det_benchmark
@@ -44,5 +44,5 @@ collect_results:tracking_performance_campaigns:
script:
- ls -lrht
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output tracking_performance_campaigns
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output tracking_performance_campaigns
- mv results{_save,}/
diff --git a/benchmarks/tracking_performances_dis/config.yml b/benchmarks/tracking_performances_dis/config.yml
index 961df549..066e8df7 100644
--- a/benchmarks/tracking_performances_dis/config.yml
+++ b/benchmarks/tracking_performances_dis/config.yml
@@ -2,7 +2,7 @@ sim:tracking_performances_dis:
extends: .det_benchmark
stage: simulate
script:
- - snakemake --cache --cores 5 results/tracking_performances_dis/epic_craterlake_tracking_only/pythia8NCDIS_18x275_minQ2=1_combined_5/hists.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 5 results/tracking_performances_dis/epic_craterlake_tracking_only/pythia8NCDIS_18x275_minQ2=1_combined_5/hists.root
retry:
max: 2
when:
@@ -14,7 +14,7 @@ bench:tracking_performances_dis:
needs:
- ["sim:tracking_performances_dis"]
script:
- - snakemake --cores 1 trk_dis_run_locally_trk_only
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 trk_dis_run_locally_trk_only
# avoid uploading intermediate results
- find results/tracking_performances_dis/ -mindepth 2 -maxdepth 2 -type d ! -name "*combined*" | xargs rm -rfv
@@ -26,7 +26,7 @@ collect_results:tracking_performances_dis:
script:
- ls -lrht
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output trk_dis_run_locally_trk_only
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output trk_dis_run_locally_trk_only
- mv results{_save,}/
# convert to png
- |
diff --git a/benchmarks/zdc_lambda/config.yml b/benchmarks/zdc_lambda/config.yml
index e6b16031..609942f5 100644
--- a/benchmarks/zdc_lambda/config.yml
+++ b/benchmarks/zdc_lambda/config.yml
@@ -12,7 +12,7 @@ sim:zdc_lambda:
- P: 250
- P: 275
script:
- - snakemake --cores 5 sim_output/zdc_lambda/epic_zdc_sipm_on_tile_only_rec_lambda_dec_${P}GeV_{0,1,2,3,4}.edm4eic.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 5 sim_output/zdc_lambda/epic_zdc_sipm_on_tile_only_rec_lambda_dec_${P}GeV_{0,1,2,3,4}.edm4eic.root
retry:
max: 2
when:
@@ -23,7 +23,7 @@ bench:zdc_lambda:
stage: benchmarks
needs: ["sim:zdc_lambda"]
script:
- - snakemake --cores 1 results/epic_zdc_sipm_on_tile_only/zdc_lambda
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 results/epic_zdc_sipm_on_tile_only/zdc_lambda
collect_results:zdc_lambda:
extends: .det_benchmark
@@ -32,5 +32,5 @@ collect_results:zdc_lambda:
script:
- ls -al
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output results/epic_zdc_sipm_on_tile_only/zdc_lambda
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output results/epic_zdc_sipm_on_tile_only/zdc_lambda
- mv results{_save,}/
diff --git a/benchmarks/zdc_lyso/config.yml b/benchmarks/zdc_lyso/config.yml
index eb0a763b..990aaef2 100644
--- a/benchmarks/zdc_lyso/config.yml
+++ b/benchmarks/zdc_lyso/config.yml
@@ -2,7 +2,7 @@ sim:zdc_lyso:
extends: .det_benchmark
stage: simulate
script:
- - snakemake --cache --cores 1 zdc_lyso_local
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 zdc_lyso_local
retry:
max: 2
when:
@@ -16,5 +16,5 @@ collect_results:zdc_lyso:
script:
- ls -lrht
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output zdc_lyso_local
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output zdc_lyso_local
- mv results{_save,}/
diff --git a/benchmarks/zdc_photon/config.yml b/benchmarks/zdc_photon/config.yml
index d62cef61..9814792a 100644
--- a/benchmarks/zdc_photon/config.yml
+++ b/benchmarks/zdc_photon/config.yml
@@ -12,7 +12,7 @@ sim:zdc_photon:
- P: 200
- P: 275
script:
- - snakemake --cores 5 sim_output/zdc_photon/epic_zdc_sipm_on_tile_only_rec_zdc_photon_${P}GeV_{0,1,2,3,4}.edm4eic.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 5 sim_output/zdc_photon/epic_zdc_sipm_on_tile_only_rec_zdc_photon_${P}GeV_{0,1,2,3,4}.edm4eic.root
retry:
max: 2
when:
diff --git a/benchmarks/zdc_pi0/config.yml b/benchmarks/zdc_pi0/config.yml
index f0b8993e..0f9a68c4 100644
--- a/benchmarks/zdc_pi0/config.yml
+++ b/benchmarks/zdc_pi0/config.yml
@@ -9,7 +9,7 @@ sim:zdc_pi0:
- P: 130
- P: 160
script:
- - snakemake --cores 5 sim_output/zdc_pi0/epic_zdc_sipm_on_tile_only_rec_zdc_pi0_${P}GeV_{0,1,2,3,4}.edm4eic.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 5 sim_output/zdc_pi0/epic_zdc_sipm_on_tile_only_rec_zdc_pi0_${P}GeV_{0,1,2,3,4}.edm4eic.root
retry:
max: 2
when:
diff --git a/benchmarks/zdc_sigma/config.yml b/benchmarks/zdc_sigma/config.yml
index af204d42..17a84f39 100644
--- a/benchmarks/zdc_sigma/config.yml
+++ b/benchmarks/zdc_sigma/config.yml
@@ -12,7 +12,7 @@ sim:zdc_sigma:
- P: 250
- P: 275
script:
- - snakemake --cores 5 sim_output/zdc_sigma/epic_zdc_sipm_on_tile_only_rec_sigma_dec_${P}GeV_{0,1,2,3,4}.edm4eic.root
+ - snakemake $SNAKEMAKE_FLAGS --cores 5 sim_output/zdc_sigma/epic_zdc_sipm_on_tile_only_rec_sigma_dec_${P}GeV_{0,1,2,3,4}.edm4eic.root
retry:
max: 2
when:
@@ -23,7 +23,7 @@ bench:zdc_sigma:
stage: benchmarks
needs: ["sim:zdc_sigma"]
script:
- - snakemake --cores 1 results/epic_zdc_sipm_on_tile_only/zdc_sigma
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 results/epic_zdc_sipm_on_tile_only/zdc_sigma
collect_results:zdc_sigma:
extends: .det_benchmark
@@ -32,5 +32,5 @@ collect_results:zdc_sigma:
script:
- ls -al
- mv results{,_save}/ # move results directory out of the way to preserve it
- - snakemake --cores 1 --delete-all-output results/epic_zdc_sipm_on_tile_only/zdc_sigma
+ - snakemake $SNAKEMAKE_FLAGS --cores 1 --delete-all-output results/epic_zdc_sipm_on_tile_only/zdc_sigma
- mv results{_save,}/
--
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